RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 SLC26A4O43511 780 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 PHF2O75151 1096 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 LYPLA2O95372 231 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 TNNC2P02585 160 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 CLTAP09496 248 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 CYP2B6P20813 491 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 AKAP5P24588 427 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 PSMA2P25787 234 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ECHS1P30084 290 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 POLR2BP30876 1174 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 LSP1P33241 339 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 GPC3P51654 580 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ITGA8P53708 1063 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ZNF200P98182 395 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 DUOXA2Q1HG44 320 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 SH3PXD2AQ5TCZ1 1133 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 BSPRYQ5W0U4 402 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 TMC3Q7Z5M5 1100 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 SLFN11Q7Z7L1 901 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ERO1BQ86YB8 467 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 EFCAB13Q8IY85 973 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ANKRD13AQ8IZ07 590 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 CHST13Q8NET6 341 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 JOSD2Q8TAC2 188 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 TWNKQ96RR1 684 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 NAP1L3Q99457 506 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 SYT17Q9BSW7 474 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 MAGEB5Q9BZ81 275 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 VPS37BQ9H9H4 285 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 NGRNQ9NPE2 291 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 FAM114A2Q9NRY5 505 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ADARB2Q9NS39 739 aaKnown RBP5.94□□□□□ -1.46
LIMA1-215ENST00000552823 ANAPC5Q9UJX4 755 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 CITO14578 2027 aa5.94□□□□□ -1.46
LIMA1-215ENST00000552823 LTBP1Q14766 1721 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 CCL15-CCL14A0A0B4J2E2 113 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 LACTBL1A8MY62 500 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 GOLGA8RI6L899 631 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 MAFGO15525 162 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 KIAA0754O94854 1291 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 IQCF3P0C7M6 154 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ATF2P15336 505 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 GARTP22102 1010 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 NAMPTP43490 491 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 AARSP49588 968 aaKnown RBP eCLIP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 YARSP54577 528 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 PTENP60484 403 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 BEX3Q00994 111 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 IFRD2Q12894 506 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 CCL15Q16663 113 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 CCDC142Q17RM4 750 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 PPP6R3Q5H9R7 873 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 FAM47CQ5HY64 1035 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ZNF667Q5HYK9 610 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 METTL7BQ6UX53 244 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ARMCX2Q7L311 632 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 RAPGEF5Q92565 580 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 NDRG1Q92597 394 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 LBHD1Q9BQE6 289 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 SYT11Q9BT88 431 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 TMEM121Q9BTD3 319 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 OSBPL8Q9BZF1 889 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 DHX33Q9H6R0 707 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 PIH1D1Q9NWS0 290 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 PARP2Q9UGN5 583 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ZNF112Q9UJU3 913 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 SYNPO2Q9UMS6 1093 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 FAM169AQ9Y6X4 670 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 MROH7Q68CQ1 1323 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ZNF831Q5JPB2 1677 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 A0A0B4J269 797 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 GOLGA6L7A0A1B0GV03 622 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 M0QYV0 167 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 PPFIA4O75335 1185 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 NPTXRO95502 500 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 CD48P09326 243 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 CTSHP09668 335 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 STAG3L1P0CL83 205 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 MUTP22033 750 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ADORA2AP29274 412 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ADORA2BP29275 332 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 RFC1P35251 1148 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ARL2P36404 184 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 PEX5P50542 639 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 GAD2Q05329 585 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 NFX1Q12986 1120 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 GPS1Q13098 491 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 CUL1Q13616 776 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 PSMD6Q15008 389 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 TMED2Q15363 201 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 QPCTQ16769 361 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 FBXW10Q5XX13 1052 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 SLFN12LQ6IEE8 588 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 C1orf228Q6PIY5 440 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 FOXR2Q6PJQ5 311 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 FAM47EQ6ZV65 393 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 RIOX2Q8IUF8 465 aa5.93□□□□□ -1.46
LIMA1-215ENST00000552823 SRRM1Q8IYB3 904 aaKnown RBP5.93□□□□□ -1.46
LIMA1-215ENST00000552823 ABRAQ8N0Z2 381 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms