RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 ZNF417Q8TAU3 575 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 USP33Q8TEY7 942 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 LMBR1Q8WVP7 490 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 CDK5RAP3Q96JB5 506 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 CEP170P1Q96L14 293 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 HHIPQ96QV1 700 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 NACC1Q96RE7 527 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 ZNF587Q96SQ5 575 aaPredicted RBP5.63□□□□□ -1.51
CLIP1-217ENST00000543205 CENPOQ9BU64 300 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 SCAND2PQ9GZW5 306 aaPredicted RBP5.63□□□□□ -1.51
CLIP1-217ENST00000543205 CSRNP2Q9H175 543 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 SUV39H2Q9H5I1 410 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 LIN7BQ9HAP6 207 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 IFT122Q9HBG6 1241 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 OSGEPQ9NPF4 335 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 GOLGA6AQ9NYA3 693 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 TUBE1Q9UJT0 475 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 FBXO2Q9UK22 296 aaPredicted RBP5.63□□□□□ -1.51
CLIP1-217ENST00000543205 SRPRBQ9Y5M8 271 aaKnown RBP5.63□□□□□ -1.51
CLIP1-217ENST00000543205 MORC2Q9Y6X9 1032 aaPredicted RBP5.63□□□□□ -1.51
CLIP1-217ENST00000543205 COL1A2P08123 1366 aa5.63□□□□□ -1.51
CLIP1-217ENST00000543205 CENPFP49454 3210 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 H0YGN5 161 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 PDE2AO00408 941 aaPredicted RBP5.62□□□□□ -1.51
CLIP1-217ENST00000543205 GABRDO14764 452 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 MAGEB2O15479 319 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 CUTAO60888 179 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 ABLIM3O94929 683 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 LYPLA2O95372 231 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 SPATA31C1P0DKV0 1188 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 RBP3P10745 1247 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 CYP2C9P11712 490 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 XRCC6P12956 609 aaKnown RBP eCLIP5.62□□□□□ -1.51
CLIP1-217ENST00000543205 ZSCAN20P17040 1043 aaPredicted RBP5.62□□□□□ -1.51
CLIP1-217ENST00000543205 KLRC1P26715 233 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 HOXC8P31273 242 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 DGKGP49619 791 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 GRIN1Q05586 938 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 BFSP2Q13515 415 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 XKR9Q5GH70 373 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 SPECC1Q5M775 1068 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 KIAA0319Q5VV43 1072 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 PLA2G4FQ68DD2 849 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 TAF2Q6P1X5 1199 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 MTHFD1LQ6UB35 978 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 ANO5Q75V66 913 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 RSPH3Q86UC2 560 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 ZBTB46Q86UZ6 589 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 CABP7Q86V35 215 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 METTL13Q8N6R0 699 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 GOLM1Q8NBJ4 401 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 RIN3Q8TB24 985 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 TRAPPC12Q8WVT3 735 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 CALML4Q96GE6 196 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 CLIC6Q96NY7 704 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 SELENOOQ9BVL4 669 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 NT5C3AQ9H0P0 336 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 HIPK3Q9H422 1215 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 PDLIM7Q9NR12 457 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 CYP26B1Q9NR63 512 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 ANKEF1Q9NU02 776 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 DDX19AQ9NUU7 478 aaKnown RBP5.62□□□□□ -1.51
CLIP1-217ENST00000543205 WRAP73Q9P2S5 460 aaPredicted RBP5.62□□□□□ -1.51
CLIP1-217ENST00000543205 CCDC39Q9UFE4 941 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 RCOR1Q9UKL0 485 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 DNM3Q9UQ16 869 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 FAM50BQ9Y247 325 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 KDM3AQ9Y4C1 1321 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 RANBP2P49792 3224 aaKnown RBP5.62□□□□□ -1.51
CLIP1-217ENST00000543205 SCN10AQ9Y5Y9 1956 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 A0A087WWV3 80 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 MBLAC1A4D2B0 266 aaPredicted RBP5.62□□□□□ -1.51
CLIP1-217ENST00000543205 TMEM150BA6NC51 233 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 TRIM43BA6NCK2 446 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 KIAA0355O15063 1070 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 LILRB5O75023 590 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 STBD1O95210 358 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 ZRANB2O95218 330 aaKnown RBP eCLIP5.62□□□□□ -1.51
CLIP1-217ENST00000543205 PF4P02776 101 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 RPLP2P05387 115 aaKnown RBP5.62□□□□□ -1.51
CLIP1-217ENST00000543205 RAG1P15918 1043 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 SYN1P17600 705 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 TMOD1P28289 359 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 THPOP40225 353 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 CASP2P42575 452 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 NPEPPSP55786 919 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 ADAM17P78536 824 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 STRN3Q13033 797 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 GALEQ14376 348 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 GRM2Q14416 872 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 PLA2G4EQ3MJ16 856 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 SEZ6Q53EL9 994 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 MARCH8Q5T0T0 291 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 FBXW10Q5XX13 1052 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 C8orf86Q6ZUL3 223 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 ARMCX6Q7L4S7 300 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 SERINC5Q86VE9 423 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 PHC3Q8NDX5 983 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 FBXO27Q8NI29 283 aa5.62□□□□□ -1.51
CLIP1-217ENST00000543205 CAGE1Q8TC20 777 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms