RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 B4GALT5O43286 388 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 POTEJP0CG39 1038 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 OVGP1Q12889 678 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 CUL2Q13617 745 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 SLMAPQ14BN4 828 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 TAF5Q15542 800 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 GPAT2Q6NUI2 795 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 SCYL2Q6P3W7 929 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 CD101Q93033 1021 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 TLCD1Q96CP7 247 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 DCTN4Q9UJW0 460 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 MYPNQ86TC9 1320 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 DGAT1O75907 488 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 ATP4AP20648 1035 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 ANXA13P27216 316 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 GPC3P51654 580 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 TAOK1Q7L7X3 1001 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 ATXN2LQ8WWM7 1075 aaKnown RBP14.36□□□□□ -0.11
PTPN1-202ENST00000541713 ZNF606Q8WXB4 792 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 ART4Q93070 314 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 NKIRAS1Q9NYS0 192 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 PCYOX1Q9UHG3 505 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 TPX2Q9ULW0 747 aaKnown RBP14.36□□□□□ -0.11
PTPN1-202ENST00000541713 UBE4BO95155 1302 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 KCNA2P16389 499 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 MAMLD1Q13495 774 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 BBS9Q3SYG4 887 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 DNAJC24Q6P3W2 148 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 TMEM192Q8IY95 271 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.36□□□□□ -0.11
PTPN1-202ENST00000541713 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.36□□□□□ -0.11
PTPN1-202ENST00000541713 TEPSINQ96N21 525 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 KIAA1683Q9H0B3 1180 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 UVRAGQ9P2Y5 699 aa14.36□□□□□ -0.11
PTPN1-202ENST00000541713 A6NNZ2 444 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 SLC26A4O43511 780 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 UPP2O95045 317 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 PDIA2Q13087 525 aaKnown RBP14.35□□□□□ -0.11
PTPN1-202ENST00000541713 WDR72Q3MJ13 1102 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 TUBB8Q3ZCM7 444 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 RAB6CQ53S08 254 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 EAPPQ56P03 285 aaPredicted RBP14.35□□□□□ -0.11
PTPN1-202ENST00000541713 FUKQ8N0W3 1084 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 UBA3Q8TBC4 463 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 RAB6CQ9H0N0 254 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 HOMER3Q9NSC5 361 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 GGA3Q9NZ52 723 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 PARP2Q9UGN5 583 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 CD48P09326 243 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 SSTR1P30872 391 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 SFNP31947 248 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 MMP13P45452 471 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 MIS18BP1Q6P0N0 1132 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 PARP9Q8IXQ6 854 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 ATL2Q8NHH9 583 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 TMEM237Q96Q45 408 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 EFCC1Q9HA90 598 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 PIM2Q9P1W9 311 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 MAGED2Q9UNF1 606 aaPredicted RBP14.35□□□□□ -0.11
PTPN1-202ENST00000541713 DIS3Q9Y2L1 958 aaKnown RBP14.35□□□□□ -0.11
PTPN1-202ENST00000541713 SIPA1L1O43166 1804 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 A0A1W2PPM1 405 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 NPM3O75607 178 aaKnown RBP14.35□□□□□ -0.11
PTPN1-202ENST00000541713 GGPS1O95749 300 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 KCNA3P22001 575 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 CA4P22748 312 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 CLCN3P51790 818 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 FKBP1AP62942 108 aaKnown RBP14.35□□□□□ -0.11
PTPN1-202ENST00000541713 BASP1P80723 227 aaKnown RBP14.35□□□□□ -0.11
PTPN1-202ENST00000541713 SEPT7Q16181 437 aaKnown RBP14.35□□□□□ -0.11
PTPN1-202ENST00000541713 PKN2Q16513 984 aaKnown RBP14.35□□□□□ -0.11
PTPN1-202ENST00000541713 RFX8Q6ZV50 586 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 TRPM4Q8TD43 1214 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 DDX27Q96GQ7 796 aaKnown RBP14.35□□□□□ -0.11
PTPN1-202ENST00000541713 TXLNGYQ9BZA5 131 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 ANKEF1Q9NU02 776 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 CYP39A1Q9NYL5 469 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 NEU2Q9Y3R4 380 aa14.35□□□□□ -0.11
PTPN1-202ENST00000541713 H0Y3Z8 333 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 NOP56O00567 594 aaKnown RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 TTC4O95801 387 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 FDX1P10109 184 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 PECAM1P16284 738 aaPredicted RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 PTPRAP18433 802 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 MAGEA4P43358 317 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 LACTBP83111 547 aaPredicted RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 OGDHQ02218 1023 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 TMEM62Q0P6H9 643 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 NFX1Q12986 1120 aaKnown RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 SNCBQ16143 134 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 GNPTABQ3T906 1256 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 TREML2Q5T2D2 321 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 TRPM8Q7Z2W7 1104 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 RHOT1Q8IXI2 618 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 LPAR1Q92633 364 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 RMDN2Q96LZ7 410 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 CNOT10Q9H9A5 744 aaKnown RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 NR2E3Q9Y5X4 410 aa14.34□□□□□ -0.11
PTPN1-202ENST00000541713 MRPL42Q9Y6G3 142 aaKnown RBP14.34□□□□□ -0.11
PTPN1-202ENST00000541713 EXTL3O43909 919 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms