RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 TSPAN18Q96SJ8 248 aa10.06□□□□□ -0.8
DDX55-208ENST00000541259 LSM14BQ9BX40 385 aaKnown RBP10.06□□□□□ -0.8
DDX55-208ENST00000541259 XYLT2Q9H1B5 865 aa10.06□□□□□ -0.8
DDX55-208ENST00000541259 NRDE2Q9H7Z3 1164 aa10.06□□□□□ -0.8
DDX55-208ENST00000541259 RC3H2Q9HBD1 1191 aaKnown RBP10.06□□□□□ -0.8
DDX55-208ENST00000541259 APOBEC3GQ9HC16 384 aaKnown RBP10.06□□□□□ -0.8
DDX55-208ENST00000541259 SIX2Q9NPC8 291 aa10.06□□□□□ -0.8
DDX55-208ENST00000541259 RAB20Q9NX57 234 aa10.06□□□□□ -0.8
DDX55-208ENST00000541259 GCNT4Q9P109 453 aa10.06□□□□□ -0.8
DDX55-208ENST00000541259 DNAJB4Q9UDY4 337 aa10.06□□□□□ -0.8
DDX55-208ENST00000541259 ITGA11Q9UKX5 1188 aa10.06□□□□□ -0.8
DDX55-208ENST00000541259 SLC4A7Q9Y6M7 1214 aa10.06□□□□□ -0.8
DDX55-208ENST00000541259 A0A1W2PQC6 194 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 GTPBP10A4D1E9 387 aaKnown RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 RNF225M0QZC1 329 aaPredicted RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 SPTLC1O15269 473 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 XPOTO43592 962 aaKnown RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 NOL4O94818 638 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 GJB5O95377 273 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 LRPAP1P30533 357 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 RBP5P82980 135 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 RNASELQ05823 741 aaKnown RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 DSC1Q08554 894 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 TUSC3Q13454 348 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 TRPC3Q13507 836 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 DMRTA1Q5VZB9 504 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 PHLDB3Q6NSJ2 640 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 TRIM65Q6PJ69 517 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 CD300LGQ6UXG3 332 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 TMC6Q7Z403 805 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 METTL3Q86U44 580 aaKnown RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 HERC6Q8IVU3 1022 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 ARHGEF19Q8IW93 802 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 COLGALT2Q8IYK4 626 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 C3orf58Q8NDZ4 430 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 MRFAP1L1Q96HT8 127 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 PCMTD1Q96MG8 357 aaPredicted RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 FAM193BQ96PV7 902 aaPredicted RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 GDF15Q99988 308 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 UBE2OQ9C0C9 1292 aaKnown RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 CWH43Q9H720 699 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 FAM207AQ9NSI2 230 aaPredicted RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 SLC38A7Q9NVC3 462 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 KANSL3Q9P2N6 904 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 AJAP1Q9UKB5 411 aaPredicted RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 POLIQ9UNA4 740 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 NUB1Q9Y5A7 615 aa10.05□□□□□ -0.8
DDX55-208ENST00000541259 LAMA2P24043 3122 aaKnown RBP10.05□□□□□ -0.8
DDX55-208ENST00000541259 PLXNA4Q9HCM2 1894 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 MYO9BQ13459 2157 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 GRXCR1A8MXD5 290 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 NT5C1B-RDH14C9J2C7 533 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 PODXLO00592 558 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 ASS1P00966 412 aaKnown RBP10.04□□□□□ -0.8
DDX55-208ENST00000541259 ITGB1P05556 798 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 TPM3P06753 285 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 ATP2A2P16615 1042 aaKnown RBP10.04□□□□□ -0.8
DDX55-208ENST00000541259 PBX3P40426 434 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 OR1G1P47890 313 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 SLC11A1P49279 550 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 RABGGTBP53611 331 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 HTRA4P83105 476 aaPredicted RBP10.04□□□□□ -0.8
DDX55-208ENST00000541259 GOLGA8FQ08AF8 430 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 GOLGA8DPQ0D2H9 430 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 CETN1Q12798 172 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 UPP1Q16831 310 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 SGSM1Q2NKQ1 1148 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 KLHDC7AQ5VTJ3 777 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 FAM109BQ6ICB4 259 aaPredicted RBP10.04□□□□□ -0.8
DDX55-208ENST00000541259 NUDT18Q6ZVK8 323 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 RRAGAQ7L523 313 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 HASPINQ8TF76 798 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 CPLX3Q8WVH0 158 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 KAT5Q92993 513 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 HPDLQ96IR7 371 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 RNPC3Q96LT9 517 aaKnown RBP10.04□□□□□ -0.8
DDX55-208ENST00000541259 SLC9A7Q96T83 725 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 SLC4A5Q9BY07 1137 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 GANQ9H2C0 597 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 MRPL42Q9Y6G3 142 aaKnown RBP10.04□□□□□ -0.8
DDX55-208ENST00000541259 TSC2P49815 1807 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 MYH10P35580 1976 aa10.04□□□□□ -0.8
DDX55-208ENST00000541259 LCHNA4D1U4 455 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 I3L4J1 428 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 NRP1O14786 923 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 ZC3H11AO75152 810 aaKnown RBP eCLIP10.03□□□□□ -0.85e-6■□□□□ 9.7
DDX55-208ENST00000541259 CLSTN1O94985 981 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 GALTP07902 379 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 MYOGP15173 224 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 CDC25BP30305 580 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 RPL9P32969 192 aaKnown RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 LILRA4P59901 499 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 POLR2FP61218 127 aaKnown RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 NOP14P78316 857 aaKnown RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 BTG3Q14201 252 aaPredicted RBP10.03□□□□□ -0.8
DDX55-208ENST00000541259 ZNF699Q32M78 642 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 WDR44Q5JSH3 913 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 SPECC1LQ69YQ0 1117 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 IQCEQ6IPM2 695 aa10.03□□□□□ -0.8
DDX55-208ENST00000541259 SCARA5Q6ZMJ2 495 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms