RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 FMR1Q06787 632 aaKnown RBP eCLIP9.16□□□□□ -0.94
YBX3-208ENST00000540447 C11orf74Q86VG3 221 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 BEST2Q8NFU1 509 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 ELOVL6Q9H5J4 265 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 C8orf4Q9NR00 106 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 KLHL3Q9UH77 587 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 TROQ12816 1431 aaPredicted RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 PRPSAP2O60256 369 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 TRMUO75648 421 aaKnown RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 GAP43P17677 238 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 ATF3P18847 181 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 RAB15P59190 212 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 POLD3Q15054 466 aaPredicted RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 C12orf60Q5U649 245 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 ZNF589Q86UQ0 364 aaPredicted RBP9.16□□□□□ -0.94
YBX3-208ENST00000540447 PROM2Q8N271 834 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 HSPH1Q92598 858 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 RORBQ92753 470 aa9.16□□□□□ -0.94
YBX3-208ENST00000540447 SEC24AO95486 1093 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 ASMTLO95671 621 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 ABCB1P08183 1280 aaPredicted RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 ARL4AP40617 200 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 CACNB1Q02641 598 aaPredicted RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 SLC18A3Q16572 532 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 ZFP1Q6P2D0 407 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 PRR23BQ6ZRT6 265 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 OSBPL6Q9BZF3 934 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 EFCAB1Q9HAE3 211 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 CYP26B1Q9NR63 512 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 PICK1Q9NRD5 415 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 MLXQ9UH92 298 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 ING4Q9UNL4 249 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 SSU72P8A0A1W2PR75 194 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 IRF6O14896 467 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 ENTPD5O75356 428 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 QARSP47897 775 aaKnown RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 LIG4P49917 911 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 YARSP54577 528 aaKnown RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 TOB2Q14106 344 aaPredicted RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 TYSND1Q2T9J0 566 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 ZC2HC1CQ53FD0 456 aaPredicted RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 FASTKD1Q53R41 847 aaKnown RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 FAM102BQ5T8I3 360 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 MICALL2Q8IY33 904 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 DEFB107AQ8IZN7 70 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 MARCH10Q8NA82 808 aaPredicted RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 PPHLN1Q8NEY8 458 aaKnown RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 FAM162AQ96A26 154 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 EAF2Q96CJ1 260 aaPredicted RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 LRMDAQ9H2I8 198 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 PMF1-BGLAPU3KQ54 211 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 FAM135AQ9P2D6 1515 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 TNKSO95271 1327 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 A0A0G2JPF8 293 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 TMEM247A6NEH6 219 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 HNRNPCL3B7ZW38 293 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 PDLIM1O00151 329 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 ZBTB39O15060 712 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 FOXN1O15353 648 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 HNRNPCL4P0DMR1 293 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 PRLRP16471 622 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 CCNA2P20248 432 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 TRAP1Q12931 704 aaKnown RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 PUM3Q15397 648 aaKnown RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 MAPK6Q16659 721 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 ZNF57Q68EA5 555 aaPredicted RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 TRIM65Q6PJ69 517 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 AIFM3Q96NN9 605 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 CARD14Q9BXL6 1004 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 OLA1Q9NTK5 396 aaKnown RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 ABCC5O15440 1437 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 DDAH1O94760 285 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 PIK3R1P27986 724 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 STX5Q13190 355 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 ZNF284Q2VY69 593 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 TCHHL1Q5QJ38 904 aaPredicted RBP9.15□□□□□ -0.94
YBX3-208ENST00000540447 ODR4Q5SWX8 454 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 SVOPQ8N4V2 548 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 TTC8Q8TAM2 541 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 OSCP1Q8WVF1 389 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 IL1RL2Q9HB29 575 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 KIAA1586Q9HCI6 787 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 HESX1Q9UBX0 185 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 PLCL2Q9UPR0 1127 aa9.15□□□□□ -0.94
YBX3-208ENST00000540447 ARHGAP31Q2M1Z3 1444 aa9.15□□□□□ -0.95
YBX3-208ENST00000540447 GAS2O43903 313 aaKnown RBP9.15□□□□□ -0.95
YBX3-208ENST00000540447 FTLP02792 175 aaPredicted RBP9.15□□□□□ -0.95
YBX3-208ENST00000540447 ANPEPP15144 967 aa9.15□□□□□ -0.95
YBX3-208ENST00000540447 HADHAP40939 763 aa9.15□□□□□ -0.95
YBX3-208ENST00000540447 METTL16Q86W50 562 aaKnown RBP9.15□□□□□ -0.95
YBX3-208ENST00000540447 UNC45BQ8IWX7 931 aa9.15□□□□□ -0.95
YBX3-208ENST00000540447 PYDC1Q8WXC3 89 aa9.15□□□□□ -0.95
YBX3-208ENST00000540447 PCDHA4Q9UN74 947 aa9.15□□□□□ -0.95
YBX3-208ENST00000540447 EIF2AK2P19525 551 aaKnown RBP9.14□□□□□ -0.95
YBX3-208ENST00000540447 ITGA8P53708 1063 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 TAF8Q7Z7C8 310 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 FAM9CQ8IZT9 166 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 MAB21L3Q8N8X9 362 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 RDM1Q8NG50 284 aa9.14□□□□□ -0.95
YBX3-208ENST00000540447 ACAT2Q9BWD1 397 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms