RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 NSRP1Q9H0G5 558 aaKnown RBP13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 EBF2Q9HAK2 575 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 ALG13Q9NP73 1137 aaKnown RBP13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 KIAA1217Q5T5P2 1943 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 SRRM3A6NNA2 597 aaPredicted RBP13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 MAP3K13O43283 966 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 RRM1P23921 792 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 ABL2P42684 1182 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 NLRP11P59045 1033 aaKnown RBP13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 ZNF280AP59817 542 aaPredicted RBP13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 ITIH4Q14624 930 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 TMEM132BQ14DG7 1078 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 TMED2Q15363 201 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 ZNF568Q3ZCX4 644 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 CAPRIN2Q6IMN6 1127 aaKnown RBP13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 CGB2Q6NT52 195 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 ANKS1BQ7Z6G8 1248 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 VSIG1Q86XK7 387 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 KIFAP3Q92845 792 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 ZBTB45Q96K62 511 aaPredicted RBP13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 ARHGAP28Q9P2N2 729 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 UVRAGQ9P2Y5 699 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 SEPT9Q9UHD8 586 aaPredicted RBP13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 HACL1Q9UJ83 578 aa13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 COL11A1P12107 1806 aaPredicted RBP13.35□□□□□ -0.27
SFSWAP-208ENST00000539506 POC1B-GALNT4F8VUJ3 575 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 THAP12O43422 761 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 CCND2P30279 289 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 FOXN2P32314 431 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 ACOT2P49753 483 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 BACE1P56817 501 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 RWDD2BP57060 319 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 PRKCEQ02156 737 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 GNPTABQ3T906 1256 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 ZFYVE27Q5T4F4 411 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 TDRD10Q5VZ19 366 aaKnown RBP13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 CRELD2Q6UXH1 353 aaPredicted RBP13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 MCOLN2Q8IZK6 566 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 C4orf33Q8N1A6 199 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 CENPTQ96BT3 561 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 GPRASP2Q96D09 838 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 CYP26B1Q9NR63 512 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 ANAPC7Q9UJX3 599 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 ZNF541Q9H0D2 1346 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 PODXLO00592 558 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 FSCN2O14926 492 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 VNN1O95497 513 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 CBX6O95503 412 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 HSPA6P17066 643 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 ADCY8P40145 1251 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 ABHD15Q6UXT9 468 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 TAOK1Q7L7X3 1001 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 ECHDC2Q86YB7 292 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 C12orf50Q8NA57 414 aaPredicted RBP13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 ANKLE1Q8NAG6 615 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 MORC4Q8TE76 937 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 ERP27Q96DN0 273 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 POLR3FQ9H1D9 316 aaPredicted RBP13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 LRRC19Q9H756 370 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 APOBEC3GQ9HC16 384 aaKnown RBP13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 HOMER3Q9NSC5 361 aa13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 R3HDM2Q9Y2K5 976 aaKnown RBP13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 CTDP1Q9Y5B0 961 aaPredicted RBP13.34□□□□□ -0.27
SFSWAP-208ENST00000539506 GGPS1O95749 300 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 GTF2H1P32780 548 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 ITGA8P53708 1063 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 HMGCS2P54868 508 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 ACTR2P61160 394 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 GCNT1Q02742 428 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 BIRC2Q13490 618 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 ZNF268Q14587 947 aaPredicted RBP13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 CLUL1Q15846 466 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 SGO2Q562F6 1265 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 BRDTQ58F21 947 aaPredicted RBP13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 TTC8Q8TAM2 541 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 TMEM143Q96AN5 459 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 VPS33BQ9H267 617 aa13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 JPH1Q9HDC5 661 aaPredicted RBP13.33□□□□□ -0.27
SFSWAP-208ENST00000539506 GJB6O95452 261 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 IVDP26440 423 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 TUBP50607 506 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 CLDN10P78369 228 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 UTP4Q969X6 686 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 METTL5Q9NRN9 209 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 RGPD3A6NKT7 1758 aaPredicted RBP13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 RGPD4Q7Z3J3 1758 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 ARID2Q68CP9 1835 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 CLGNO14967 610 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 ECEL1O95672 775 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 C4BPAP04003 597 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 PTPRAP18433 802 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 ACO1P21399 889 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 DSG3P32926 999 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 NBPF20Q3BBV1 942 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 MTERF2Q49AM1 385 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 EAPPQ56P03 285 aaPredicted RBP13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 RDM1Q8NG50 284 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 BICD1Q96G01 975 aa13.33□□□□□ -0.28
SFSWAP-208ENST00000539506 PITPNM3Q9BZ71 974 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms