RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 TAS1R3Q7RTX0 852 aa17.17■□□□□ 0.34
CHMP4A-207ENST00000533523 NELL1Q92832 810 aa17.17■□□□□ 0.34
CHMP4A-207ENST00000533523 ACAP3Q96P50 834 aa17.17■□□□□ 0.34
CHMP4A-207ENST00000533523 NELL2Q99435 816 aa17.17■□□□□ 0.34
CHMP4A-207ENST00000533523 RUSC1Q9BVN2 902 aa17.17■□□□□ 0.34
CHMP4A-207ENST00000533523 EPC1Q9H2F5 836 aa17.17■□□□□ 0.34
CHMP4A-207ENST00000533523 CNTN3Q9P232 1028 aa17.17■□□□□ 0.34
CHMP4A-207ENST00000533523 ARHGAP28Q9P2N2 729 aa17.17■□□□□ 0.34
CHMP4A-207ENST00000533523 ANKFY1Q9P2R3 1169 aa17.17■□□□□ 0.34
CHMP4A-207ENST00000533523 E9PMD0 336 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 NRG2O14511 850 aaPredicted RBP17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 CPB1P15086 417 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 KCNE1P15382 129 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 TWF1Q12792 350 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 ST3GAL2Q16842 350 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 XKR4Q5GH76 650 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 ARL6IP4Q66PJ3 421 aaKnown RBP17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 TCEAL8Q8IYN2 117 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 DAW1Q8N136 415 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 ZBTB44Q8NCP5 570 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 BORCS6Q96GS4 357 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 DRC1Q96MC2 740 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 ASB16Q96NS5 453 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 TRMT61BQ9BVS5 477 aaKnown RBP17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 ZSCAN16Q9H4T2 348 aaPredicted RBP17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 SLITRK6Q9H5Y7 841 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 TMEM134Q9H6X4 195 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 PTPRHQ9HD43 1115 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 USP18Q9UMW8 372 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 DNM3Q9UQ16 869 aa17.16■□□□□ 0.34
CHMP4A-207ENST00000533523 LOC400499M0QZD8 3231 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 DSPP15924 2871 aaKnown RBP17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 ITPR1Q14643 2758 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 PP2D1A8MPX8 630 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 MAN2B1O00754 1011 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 SLC16A4O15374 487 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 TBC1D4O60343 1298 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 LILRB5O75023 590 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 MYL4P12829 197 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 NOLC1Q14978 699 aaKnown RBP eCLIP17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 CYP4A22Q5TCH4 519 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 TPGS2Q68CL5 300 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 IQCEQ6IPM2 695 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 HS6ST3Q8IZP7 471 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 SUSD3Q96L08 255 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 ASAH2Q9NR71 780 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 TUBGCP4Q9UGJ1 667 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 GMEB2Q9UKD1 530 aa17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 CDV3Q9UKY7 258 aaKnown RBP17.15■□□□□ 0.34
CHMP4A-207ENST00000533523 FASNP49327 2511 aaKnown RBP17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 DMXL2Q8TDJ6 3036 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 ABLIM1O14639 778 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 ADRB1P08588 477 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 GJA1P17302 382 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 PROZP22891 400 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 GDI1P31150 447 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 RPL9P32969 192 aaKnown RBP17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 STRN3Q13033 797 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 FZD5Q13467 585 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 ZRSR1Q15695 479 aaKnown RBP17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 FOXD4L6Q3SYB3 417 aaPredicted RBP17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 SEZ6Q53EL9 994 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 VITQ6UXI7 678 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 FOXD4L3Q6VB84 417 aaPredicted RBP17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 KCTD17Q8N5Z5 321 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 GPR161Q8N6U8 529 aaKnown RBP17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 APPL2Q8NEU8 664 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 SMARCD2Q92925 531 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 IRF7Q92985 503 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 ZNF512Q96ME7 567 aaPredicted RBP17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 CHRDQ9H2X0 955 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 AFF4Q9UHB7 1163 aaKnown RBP17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 RAB23Q9ULC3 237 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 ATP6V1DQ9Y5K8 247 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 PIAS3Q9Y6X2 628 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 ATG2BQ96BY7 2078 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 LAMA5O15230 3695 aa17.14■□□□□ 0.33
CHMP4A-207ENST00000533523 MEFVO15553 781 aaPredicted RBP17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 TDGF1P13385 188 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 PSMC3P17980 439 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 VIPR2P41587 438 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 MATR3P43243 847 aaKnown RBP eCLIP17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 LMNB2Q03252 620 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 RAD51AP2Q09MP3 1159 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 MAPK7Q13164 816 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 MRPL58Q14197 206 aaKnown RBP17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 PPP2R5DQ14738 602 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 LPAL2Q16609 132 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 FAM173BQ6P4H8 233 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 ZSCAN18Q8TBC5 510 aaPredicted RBP17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 FAM3CQ92520 227 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 DDX12PQ92771 950 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 ZBTB45Q96K62 511 aaPredicted RBP17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 ZSWIM3Q96MP5 696 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 FAM126AQ9BYI3 521 aaPredicted RBP17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 ZNF334Q9HCZ1 680 aaPredicted RBP17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 CEP72Q9P209 647 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 PCDHB8Q9UN66 801 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 YIPF1Q9Y548 306 aa17.13■□□□□ 0.33
CHMP4A-207ENST00000533523 SMG1Q96Q15 3661 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms