RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PLEKHA4Q9H4M7 779 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 INTS13Q9NVM9 706 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 ITGA11Q9UKX5 1188 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 PCDHA5Q9Y5H7 936 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 PTPRJQ12913 1337 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 VCANP13611 3396 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 ARHGEF37A1IGU5 675 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 SPTLC1O15269 473 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 PRPF40AO75400 957 aaKnown RBP16.24■□□□□ 0.19
CPSF1-208ENST00000532560 PAPLNO95428 1278 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 ODC1P11926 461 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 TYMPP19971 482 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 PNPLA4P41247 253 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 TAF6P49848 677 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 RAB33AQ14088 237 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 RARS2Q5T160 578 aaKnown RBP16.24■□□□□ 0.19
CPSF1-208ENST00000532560 ZNF658Q5TYW1 1059 aaPredicted RBP16.24■□□□□ 0.19
CPSF1-208ENST00000532560 SLC8B1Q6J4K2 584 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 CES5AQ6NT32 575 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 PALB2Q86YC2 1186 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 RDH13Q8NBN7 331 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 CMASQ8NFW8 434 aaPredicted RBP16.24■□□□□ 0.19
CPSF1-208ENST00000532560 CXorf38Q8TB03 319 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 ANKRD36BP1Q96IX9 119 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 MFSD14AQ96MC6 490 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 FNBP1Q96RU3 617 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 CGRRF1Q99675 332 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 FBXW11Q9UKB1 542 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 MAPK8IP1Q9UQF2 711 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 CDY1Q9Y6F8 540 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 SCN1AP35498 2009 aa16.24■□□□□ 0.19
CPSF1-208ENST00000532560 MTCL1Q9Y4B5 1905 aaKnown RBP16.23■□□□□ 0.19
CPSF1-208ENST00000532560 SPDYE4A6NLX3 237 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 OAZ2O95190 189 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 ITGB3P05106 788 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 POLR2BP30876 1174 aaKnown RBP16.23■□□□□ 0.19
CPSF1-208ENST00000532560 OR1D2P34982 312 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 CBX2Q14781 532 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-208ENST00000532560 SV2CQ496J9 727 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 ZCWPW2Q504Y3 356 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 LMBRD2Q68DH5 695 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-208ENST00000532560 RSPO2Q6UXX9 243 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-208ENST00000532560 DSTYKQ6XUX3 929 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 C15orf39Q6ZRI6 1047 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 ADHFE1Q8IWW8 467 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 SMYD4Q8IYR2 804 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-208ENST00000532560 LRRC52Q8N7C0 313 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 C12orf76Q8N812 135 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-208ENST00000532560 KREMEN2Q8NCW0 462 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 ERCC4Q92889 916 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-208ENST00000532560 FAM84AQ96KN4 292 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 SENP8Q96LD8 212 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 NECTIN4Q96NY8 510 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 APOL5Q9BWW9 433 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 OXCT2Q9BYC2 517 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-208ENST00000532560 RHOBTB2Q9BYZ6 727 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 GZF1Q9H116 711 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-208ENST00000532560 SIX4Q9UIU6 781 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 FBXL5Q9UKA1 691 aa16.23■□□□□ 0.19
CPSF1-208ENST00000532560 TULP1O00294 542 aaPredicted RBP16.22■□□□□ 0.19
CPSF1-208ENST00000532560 TNNC2P02585 160 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 CYP11A1P05108 521 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 DLATP10515 647 aaKnown RBP16.22■□□□□ 0.19
CPSF1-208ENST00000532560 NR2F2P24468 414 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 MTHFRP42898 656 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 ROR1Q01973 937 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 YWHAHQ04917 246 aaPredicted RBP16.22■□□□□ 0.19
CPSF1-208ENST00000532560 ZP2Q05996 745 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 DUOXA2Q1HG44 320 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 EDRF1Q3B7T1 1238 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 CTXN3Q4LDR2 81 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 CYP26C1Q6V0L0 522 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 GPR149Q86SP6 731 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 USP37Q86T82 979 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 CSGALNACT2Q8N6G5 542 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 OR5B17Q8NGF7 314 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 BORCS6Q96GS4 357 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 RIPOR3Q96MK2 946 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 NECAB3Q96P71 396 aaPredicted RBP16.22■□□□□ 0.19
CPSF1-208ENST00000532560 POP1Q99575 1024 aaKnown RBP16.22■□□□□ 0.19
CPSF1-208ENST00000532560 ZDHHC7Q9NXF8 308 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 DSEQ9UL01 958 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 AGAP1Q9UPQ3 857 aa16.22■□□□□ 0.19
CPSF1-208ENST00000532560 TTC28Q96AY4 2481 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 KPNA7A9QM74 516 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 MAPK13O15264 365 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 ZMYND10O75800 440 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 SPATA31D3P0C874 917 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 TNNI1P19237 187 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 HOXA9P31269 272 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 PRCPP42785 496 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 RBP5P82980 135 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 LIN9Q5TKA1 542 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 OVOS1Q6IE37 1185 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 TMC5Q6UXY8 1006 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 SPATA31D4Q6ZUB0 917 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 RTL10Q7L3V2 364 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 ZNF461Q8TAF7 563 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 CCDC127Q96BQ5 260 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 PHF7Q9BWX1 381 aaPredicted RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms