RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 ZYXQ15942 572 aaKnown RBP14.92□□□□□ -0.02
PCF11-204ENST00000530660 SEL1L2Q5TEA6 688 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 ARHGAP24Q8N264 748 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 GSTCDQ8NEC7 633 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 CCDC110Q8TBZ0 833 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 JDP2Q8WYK2 163 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 USP6NLQ92738 828 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 SKA1Q96BD8 255 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 MTBPQ96DY7 904 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 CLIP3Q96DZ5 547 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 GCNAQ96QF7 691 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 ZSWIM1Q9BR11 485 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 TMEM120AQ9BXJ8 343 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 MRPL1Q9BYD6 325 aaKnown RBP14.92□□□□□ -0.02
PCF11-204ENST00000530660 DNAJC18Q9H819 358 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 PLCH1Q4KWH8 1693 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 EXOC1LA0A1B0GW35 172 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 XPOTO43592 962 aaKnown RBP14.92□□□□□ -0.02
PCF11-204ENST00000530660 STRNO43815 780 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 HSPA6P17066 643 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 GCAP28676 217 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 HOXD11P31277 338 aaPredicted RBP14.92□□□□□ -0.02
PCF11-204ENST00000530660 MESDQ14696 234 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 C16orf72Q14CZ0 275 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 SLC35G1Q2M3R5 365 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 SPTY2D1Q68D10 685 aaPredicted RBP14.92□□□□□ -0.02
PCF11-204ENST00000530660 NET1Q7Z628 596 aaPredicted RBP14.92□□□□□ -0.02
PCF11-204ENST00000530660 DHDDSQ86SQ9 333 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 SLC13A5Q86YT5 568 aaPredicted RBP14.92□□□□□ -0.02
PCF11-204ENST00000530660 UBL4BQ8N7F7 174 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 ARMC7Q9H6L4 198 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 ZDHHC7Q9NXF8 308 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 WHRNQ9P202 907 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 NIP7Q9Y221 180 aaKnown RBP eCLIP14.92□□□□□ -0.02
PCF11-204ENST00000530660 TSPY2A6NKD2 308 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 FCHO1O14526 889 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 FGRP09769 529 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 NR2F2P24468 414 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 IVDP26440 423 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 FOLH1Q04609 750 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 TRMT5Q32P41 509 aaKnown RBP14.92□□□□□ -0.02
PCF11-204ENST00000530660 ANKRD20A4Q4UJ75 823 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 TMEM214Q6NUQ4 689 aaKnown RBP14.92□□□□□ -0.02
PCF11-204ENST00000530660 RNF207Q6ZRF8 634 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 ALYREFQ86V81 257 aaKnown RBP14.92□□□□□ -0.02
PCF11-204ENST00000530660 DGKHQ86XP1 1220 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 FAM172AQ8WUF8 416 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 CCDC77Q9BR77 488 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 TCHPQ9BT92 498 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 TUBB6Q9BUF5 446 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 SIX2Q9NPC8 291 aa14.92□□□□□ -0.02
PCF11-204ENST00000530660 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.92□□□□□ -0.02
PCF11-204ENST00000530660 NDC80O14777 642 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 BIRC5O15392 142 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 OXSR1O95747 527 aaPredicted RBP14.91□□□□□ -0.02
PCF11-204ENST00000530660 COMTP21964 271 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 ENTPD1P49961 510 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 JAM2P57087 298 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 TLR1Q15399 786 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 PDCD4Q53EL6 469 aaKnown RBP14.91□□□□□ -0.02
PCF11-204ENST00000530660 C6orf163Q5TEZ5 329 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 SLC7A5P1Q8MH63 180 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 PPP4R1Q8TF05 950 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 GDPD5Q8WTR4 605 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 TRIM55Q9BYV6 548 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 KCNK13Q9HB14 408 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 GPCPD1Q9NPB8 672 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 ANAPC5Q9UJX4 755 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 APPL1Q9UKG1 709 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 MTUS1Q9ULD2 1270 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 TRIM17Q9Y577 477 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 KLRF2D3W0D1 207 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 PRPF4O43172 522 aaKnown RBP eCLIP14.91□□□□□ -0.022e-8■■□□□ 14.2
PCF11-204ENST00000530660 PIAS1O75925 651 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 VCPP55072 806 aaKnown RBP14.91□□□□□ -0.02
PCF11-204ENST00000530660 PFKPQ01813 784 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 PLCB3Q01970 1234 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 GK3PQ14409 553 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 HIPK4Q8NE63 616 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 RAD54LQ92698 747 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 RBM15Q96T37 977 aaKnown RBP eCLIP14.91□□□□□ -0.024e-8■■■■■ 40.5
PCF11-204ENST00000530660 CPVLQ9H3G5 476 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 ACP6Q9NPH0 428 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 GCNT4Q9P109 453 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 CROTQ9UKG9 612 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 SH3PXD2BA1X283 911 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 CLDN3O15551 220 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 MAGEC1O60732 1142 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 ITIH2P19823 946 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 STAT1P42224 750 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 MARSP56192 900 aaKnown RBP14.91□□□□□ -0.02
PCF11-204ENST00000530660 NOP14P78316 857 aaKnown RBP14.91□□□□□ -0.02
PCF11-204ENST00000530660 CDK16Q00536 496 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 NONOQ15233 471 aaKnown RBP eCLIP14.91□□□□□ -0.02
PCF11-204ENST00000530660 IYDQ6PHW0 289 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 CLEC4GQ6UXB4 293 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 DNAJC19Q96DA6 116 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 SNF8Q96H20 258 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 BRIP1Q9BX63 1249 aa14.91□□□□□ -0.02
PCF11-204ENST00000530660 ZHX3Q9H4I2 956 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms