RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	RARB	P10826	455 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	GPR3	P46089	330 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	DNM2	P50570	870 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	OCRL	Q01968	901 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	DLX2	Q07687	328 aa	Predicted RBP	4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	FAP	Q12884	760 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	BRD3	Q15059	726 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	TERF2	Q15554	542 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	GRIK4	Q16099	956 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	TCTN1	Q2MV58	587 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	ZNF792	Q3KQV3	632 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	MINDY4	Q4G0A6	757 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	SFRP5	Q5T4F7	317 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	SLC9C2	Q5TAH2	1124 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	C11orf96	Q7Z7L8	435 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	ADSSL1	Q8N142	457 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	ARMC10	Q8N2F6	343 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	ZNF655	Q8N720	491 aa	Predicted RBP	4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	ENOX1	Q8TC92	643 aa	Known RBP	4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	EDA	Q92838	391 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	GATA6	Q92908	595 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	FBXW5	Q969U6	566 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	CLIP3	Q96DZ5	547 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	TCTN2	Q96GX1	697 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	COX4I2	Q96KJ9	171 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	AIFM3	Q96NN9	605 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	MMP19	Q99542	508 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	GPR62	Q9BZJ7	368 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	KATNBL1	Q9H079	304 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	SMURF1	Q9HCE7	757 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	TOPORS	Q9NS56	1045 aa	Predicted RBP	4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	SWAP70	Q9UH65	585 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	NRBP1	Q9UHY1	535 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	MTUS1	Q9ULD2	1270 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	CAPN6	Q9Y6Q1	641 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981		U3KQE9	123 aa		4.99	□□□□□ -1.61
VPS52-222	ENST00000495981	BPTF	Q12830	3046 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	IGKV6D-41	A0A0C4DH26	115 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	WASH4P	A8MWX3	477 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	VWA5A	O00534	786 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	MPHOSPH10	O00566	681 aa	Known RBP	4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	STRN	O43815	780 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	SNAI1	O95863	264 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	NDUFB10	O96000	172 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	AMY2A	P04746	511 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	ASGR1	P07306	291 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	AMY2B	P19961	511 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	GRK2	P25098	689 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	CST5	P28325	142 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	NOS3	P29474	1203 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	SERPINB3	P29508	390 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	AVPR2	P30518	371 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	GRK3	P35626	688 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	KIR3DL1	P43629	444 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	SEPHS1	P49903	392 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	GTF2H3	Q13889	308 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	MORC3	Q14149	939 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	COG2	Q14746	738 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	PDCD1	Q15116	288 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	SMAD2	Q15796	467 aa	Known RBP	4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	LONRF3	Q496Y0	759 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	FAM83B	Q5T0W9	1011 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	C12orf60	Q5U649	245 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	EEF1DP3	Q658K8	133 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	ZNF385C	Q66K41	422 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	CWF19L1	Q69YN2	538 aa	Known RBP	4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	CCDC174	Q6PII3	467 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	RASGRP2	Q7LDG7	609 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	DGLUCY	Q7Z3D6	616 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	FRMD5	Q7Z6J6	570 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	C11orf74	Q86VG3	221 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	RIOX2	Q8IUF8	465 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	HERC6	Q8IVU3	1022 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	ADHFE1	Q8IWW8	467 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	SVOP	Q8N4V2	548 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	LMBR1	Q8WVP7	490 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	KIF1BP	Q96EK5	621 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	HSPBAP1	Q96EW2	488 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	ASIC4	Q96FT7	647 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	NUP88	Q99567	741 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	UPF3A	Q9H1J1	476 aa	Known RBP	4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	HIPK3	Q9H422	1215 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	MROH8	Q9H579	483 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	SH2D4A	Q9H788	454 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	ZBTB40	Q9NUA8	1239 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	GPATCH2	Q9NW75	528 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	PAG1	Q9NWQ8	432 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	ARPP21	Q9UBL0	812 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	KCNH3	Q9ULD8	1083 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	PCDHA2	Q9Y5H9	948 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	SCN10A	Q9Y5Y9	1956 aa		4.98	□□□□□ -1.61
VPS52-222	ENST00000495981	ATG2A	Q2TAZ0	1938 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	OTOGL	Q3ZCN5	2332 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	PLXNA3	P51805	1871 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	ANO9	A1A5B4	782 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981		A6NNZ2	444 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	CYSRT1	A8MQ03	144 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	ATP2A1	O14983	1001 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	FOXP2	O15409	715 aa		4.97	□□□□□ -1.61
VPS52-222	ENST00000495981	FGF10	O15520	208 aa	Predicted RBP	4.97	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms