RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 C10orf76Q5T2E6 689 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 C9orf57Q5W0N0 161 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 SLC24A5Q71RS6 500 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 NOP9Q86U38 636 aaKnown RBP12.31□□□□□ -0.44
C9orf3-220ENST00000489318 RTN4RL1Q86UN2 441 aaPredicted RBP12.31□□□□□ -0.44
C9orf3-220ENST00000489318 ZNF677Q86XU0 584 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 GPIHBP1Q8IV16 184 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 DDX1Q92499 740 aaKnown RBP12.31□□□□□ -0.44
C9orf3-220ENST00000489318 C18orf25Q96B23 403 aaPredicted RBP12.31□□□□□ -0.44
C9orf3-220ENST00000489318 ELMO3Q96BJ8 720 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 HPDLQ96IR7 371 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 ZFP42Q96MM3 310 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 ZNF560Q96MR9 790 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 HIPK3Q9H422 1215 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 ELAC1Q9H777 363 aaKnown RBP12.31□□□□□ -0.44
C9orf3-220ENST00000489318 RSAD1Q9HA92 442 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 CYP3A43Q9HB55 503 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.31□□□□□ -0.44
C9orf3-220ENST00000489318 KLK14Q9P0G3 267 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 NAGPAQ9UK23 515 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 AGAP1Q9UPQ3 857 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 TET1Q8NFU7 2136 aa12.31□□□□□ -0.44
C9orf3-220ENST00000489318 FNDC1Q4ZHG4 1894 aaPredicted RBP12.3□□□□□ -0.44
C9orf3-220ENST00000489318 COL4A6Q14031 1691 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 ARL5CA6NH57 179 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 TULP1O00294 542 aaPredicted RBP12.3□□□□□ -0.44
C9orf3-220ENST00000489318 DDX3XO00571 662 aaKnown RBP eCLIP12.3□□□□□ -0.44
C9orf3-220ENST00000489318 PPEF2O14830 753 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 CYP26A1O43174 497 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 TUBB4AP04350 444 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 P4HA1P13674 534 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 RFC2P35250 354 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 BPIFB4P59827 614 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 MYO1EQ12965 1108 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 GRIK3Q13003 919 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 SPA17Q15506 151 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 WDR72Q3MJ13 1102 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 LIMS2Q7Z4I7 341 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 UBE2Q1Q7Z7E8 422 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 SLC47A2Q86VL8 602 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 TMEM130Q8N3G9 435 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 TXLNBQ8N3L3 684 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 TTC39CQ8N584 583 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 RBBP8NLQ8NC74 664 aaPredicted RBP12.3□□□□□ -0.44
C9orf3-220ENST00000489318 SLC20A1Q8WUM9 679 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 SEPT8Q92599 483 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 LPPQ93052 612 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 PAWRQ96IZ0 340 aaKnown RBP12.3□□□□□ -0.44
C9orf3-220ENST00000489318 RPS6KC1Q96S38 1066 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 GAD1Q99259 594 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 AGPAT1Q99943 283 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 CISHQ9NSE2 258 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 TRMT1Q9NXH9 659 aaKnown RBP12.3□□□□□ -0.44
C9orf3-220ENST00000489318 GDAP2Q9NXN4 497 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 ADAMTS1Q9UHI8 967 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 DNAH12Q6ZR08 3092 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 TTC3P53804 2025 aa12.3□□□□□ -0.44
C9orf3-220ENST00000489318 A0A0U1RQJ8 604 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 KIF2AO00139 706 aaPredicted RBP12.29□□□□□ -0.44
C9orf3-220ENST00000489318 CILPO75339 1184 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 THP07101 528 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 CLTBP09497 229 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 CHRNB2P17787 502 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 FMO1Q01740 532 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 CDR2Q01850 454 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 CYP27A1Q02318 531 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 LRRC26Q2I0M4 334 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 TMEM270Q6UE05 265 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 NECAB2Q7Z6G3 386 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 GLYCTKQ8IVS8 523 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 CRIPAKQ8N1N5 446 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 DBF4BQ8NFT6 615 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 ATRIPQ8WXE1 791 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 RSPH1Q8WYR4 309 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 TMEM106CQ9BVX2 250 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 TSGA10Q9BZW7 698 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 MCOLN1Q9GZU1 580 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 SDCBP2Q9H190 292 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 LUC7LQ9NQ29 371 aaKnown RBP12.29□□□□□ -0.44
C9orf3-220ENST00000489318 TMEM161AQ9NX61 479 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 INTUQ9ULD6 942 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 POLIQ9UNA4 740 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 PCDHB4Q9Y5E5 795 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 PCDHA13Q9Y5I0 950 aa12.29□□□□□ -0.44
C9orf3-220ENST00000489318 RCCD1A6NED2 376 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 BTNL10A8MVZ5 291 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 KIAA0355O15063 1070 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 OFD1O75665 1012 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 PAEPP09466 180 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 GZMAP12544 262 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 KRT5P13647 590 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 USP8P40818 1118 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 MAGEA1P43355 309 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 TAF6P49848 677 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 SCNN1GP51170 649 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 AFF1P51825 1210 aaKnown RBP12.28□□□□□ -0.44
C9orf3-220ENST00000489318 TNNC1P63316 161 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 SV2CQ496J9 727 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 ARHGAP29Q52LW3 1261 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 ALKBH5Q6P6C2 394 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms