RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 SYN3O14994 580 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 USO1O60763 962 aaKnown RBP10.18□□□□□ -0.78
COL17A1-207ENST00000488320 CPB1P15086 417 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 MARCKSP29966 332 aaPredicted RBP10.18□□□□□ -0.78
COL17A1-207ENST00000488320 YARSP54577 528 aaKnown RBP10.18□□□□□ -0.78
COL17A1-207ENST00000488320 EPHB3P54753 998 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 EPHA5P54756 1037 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 PLCB2Q00722 1185 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 TNK2Q07912 1038 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 NTRK3Q16288 839 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 FAM187BQ17R55 369 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 ITPRIPL2Q3MIP1 535 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 DCAF4L1Q3SXM0 396 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 SOWAHCQ53LP3 525 aaPredicted RBP10.18□□□□□ -0.78
COL17A1-207ENST00000488320 ARHGAP15Q53QZ3 475 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 ZNF280DQ6N043 979 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 C3orf58Q8NDZ4 430 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 EIF2AK1Q9BQI3 630 aaKnown RBP10.18□□□□□ -0.78
COL17A1-207ENST00000488320 MKNK1Q9BUB5 465 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 C2orf40Q9H1Z8 148 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 ATXN3LQ9H3M9 355 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 GPRC5CQ9NQ84 441 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 KLK13Q9UKR3 277 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 TPCN1Q9ULQ1 816 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 MAFFQ9ULX9 164 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 LAMA1P25391 3075 aa10.18□□□□□ -0.78
COL17A1-207ENST00000488320 NUP205Q92621 2012 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 LAMA5O15230 3695 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 A0A087WWV3 80 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 M0R2N6 131 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 ACKR2O00590 384 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 PODXLO00592 558 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 RNF40O75150 1001 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 GCFC2P16383 781 aaKnown RBP10.17□□□□□ -0.78
COL17A1-207ENST00000488320 ATP2B1P20020 1258 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 ALDH1A3P47895 512 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 DGKEP52429 567 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 PLD1Q13393 1074 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 TSGA10IPQ3SY00 556 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 STXBP5Q5T5C0 1151 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 GPR158Q5T848 1215 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 EEF1DP3Q658K8 133 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 GALNT17Q6IS24 598 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 RNF19BQ6ZMZ0 732 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 APBB1IPQ7Z5R6 666 aaPredicted RBP10.17□□□□□ -0.78
COL17A1-207ENST00000488320 NEK8Q86SG6 692 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 PDZD3Q86UT5 571 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 SLFN12Q8IYM2 578 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 APPL2Q8NEU8 664 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 BPIFB1Q8TDL5 484 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 PIGOQ8TEQ8 1089 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 HAS1Q92839 578 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 LRRC3BQ96PB8 259 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 NAP1L4Q99733 375 aaKnown RBP10.17□□□□□ -0.78
COL17A1-207ENST00000488320 NCOA5Q9HCD5 579 aaKnown RBP10.17□□□□□ -0.78
COL17A1-207ENST00000488320 POLR3BQ9NW08 1133 aaPredicted RBP10.17□□□□□ -0.78
COL17A1-207ENST00000488320 INVSQ9Y283 1065 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 THADAQ6YHU6 1953 aa10.17□□□□□ -0.78
COL17A1-207ENST00000488320 SMIM28A0A1B0GU29 152 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 PATE3B3GLJ2 98 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 CDX4O14627 284 aaPredicted RBP10.16□□□□□ -0.78
COL17A1-207ENST00000488320 DEXIO95424 95 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 EGFP01133 1207 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 RARRES1P49788 294 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 IRX4P78413 519 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 SIM1P81133 766 aaPredicted RBP10.16□□□□□ -0.78
COL17A1-207ENST00000488320 AMPD2Q01433 879 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 PSMD2Q13200 908 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 MRPL58Q14197 206 aaKnown RBP10.16□□□□□ -0.78
COL17A1-207ENST00000488320 USP39Q53GS9 565 aaKnown RBP10.16□□□□□ -0.78
COL17A1-207ENST00000488320 TMEM196Q5HYL7 178 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 CDCA2Q69YH5 1023 aaPredicted RBP10.16□□□□□ -0.78
COL17A1-207ENST00000488320 FSTL4Q6MZW2 842 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 BLOC1S2Q6QNY1 142 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 CYP2U1Q7Z449 544 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 DAGLBQ8NCG7 672 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 DEPTORQ8TB45 409 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 EXOC4Q96A65 974 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 PGLYRP2Q96PD5 576 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 CCDC94Q9BW85 323 aaPredicted RBP10.16□□□□□ -0.78
COL17A1-207ENST00000488320 GKN1Q9NS71 199 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 SLC38A7Q9NVC3 462 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 OBP2AQ9NY56 170 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 PCDHA12Q9UN75 941 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 YIPF1Q9Y548 306 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 ABCA7Q8IZY2 2146 aa10.16□□□□□ -0.78
COL17A1-207ENST00000488320 AKAP13Q12802 2813 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 NBEAQ8NFP9 2946 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 SPAARA0A1B0GVQ0 90 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 H0Y626 953 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 CPLX1O14810 134 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 TRIM16O95361 564 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 LYPLA2O95372 231 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 APBB3O95704 486 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 FGF19O95750 216 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 GABRR2P28476 465 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 MCM4P33991 863 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 MAPK8P45983 427 aa10.15□□□□□ -0.78
COL17A1-207ENST00000488320 DHPSP49366 369 aaPredicted RBP10.15□□□□□ -0.78
COL17A1-207ENST00000488320 MCM2P49736 904 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms