RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	APOBEC3A	P31941	199 aa	Predicted RBP	5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	MRPL49	Q13405	166 aa	Known RBP	5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	BMS1	Q14692	1282 aa	Known RBP	5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	C21orf62-AS1	Q17RA5	79 aa		5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	GPRIN1	Q7Z2K8	1008 aa		5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	NBPF5P	Q86XG9	351 aa	Predicted RBP	5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	XYLT1	Q86Y38	959 aa		5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	UIMC1	Q96RL1	719 aa		5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	CPPED1	Q9BRF8	314 aa	Predicted RBP	5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	NUP98	P52948	1817 aa		5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PASK	Q96RG2	1323 aa		5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	FSBP	O95073	299 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ASMTL	O95671	621 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ABHD16A	O95870	558 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	F2	P00734	622 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	GNAT2	P19087	354 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	FBL	P22087	321 aa	Known RBP	5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ALDH1B1	P30837	517 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	CCDC93	Q567U6	631 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	SLC41A1	Q8IVJ1	513 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	UNC5B	Q8IZJ1	945 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	BBC3	Q96PG8	261 aa	Predicted RBP	5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	TAF1D	Q9H5J8	278 aa	Predicted RBP	5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	TMEM260	Q9NX78	707 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	NIP7	Q9Y221	180 aa	Known RBP eCLIP	5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	CHST2	Q9Y4C5	530 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941	DLG5	Q8TDM6	1919 aa		5.19	□□□□□ -1.58
SNRNP40-205	ENST00000486941		A0A1W2PR48	441 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PRSS38	A1L453	326 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ERVV-1	B6SEH8	477 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	FZD9	O00144	591 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	DNAJC6	O75061	913 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PPFIA2	O75334	1257 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	U2AF1L5	P0DN76	240 aa	Predicted RBP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PPP2R1A	P30153	589 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ZEB1	P37275	1124 aa	Predicted RBP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PIP4K2A	P48426	406 aa	Predicted RBP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	U2AF1	Q01081	240 aa	Known RBP eCLIP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	LRRC32	Q14392	662 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PCBP1	Q15365	356 aa	Known RBP eCLIP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	TAF7	Q15545	349 aa	Predicted RBP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PLEKHG4	Q58EX7	1191 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	LY6G5C	Q5SRR4	150 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ANKS6	Q68DC2	871 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	TIGD7	Q6NT04	549 aa	Predicted RBP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	OLFML1	Q6UWY5	402 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941		Q6YL49	198 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	UBE2R2	Q712K3	238 aa	Predicted RBP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	MCM10	Q7L590	875 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PNMA8A	Q86V59	439 aa	Predicted RBP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PRIMA1	Q86XR5	153 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	SYNE4	Q8N205	404 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	NDC1	Q9BTX1	674 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ALG13	Q9NP73	1137 aa	Known RBP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ZNF277	Q9NRM2	450 aa	Predicted RBP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	INTS7	Q9NVH2	962 aa	Known RBP	5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ANKFY1	Q9P2R3	1169 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	HACL1	Q9UJ83	578 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	SYNPO2	Q9UMS6	1093 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PCDHB6	Q9Y5E3	794 aa		5.18	□□□□□ -1.58
SNRNP40-205	ENST00000486941	CNTNAP1	P78357	1384 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ADAMTSL1	Q8N6G6	1762 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	TMEM200C	A6NKL6	621 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	TRIM24	O15164	1050 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	KPNA6	O60684	536 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	NUDT3	O95989	172 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	EPHX2	P34913	555 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	IARS	P41252	1262 aa	Known RBP	5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	DCTN1	Q14203	1278 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PTPA	Q15257	358 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	HLF	Q16534	295 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	MAN2A1	Q16706	1144 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	CCDC142	Q17RM4	750 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	CRY2	Q49AN0	593 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	METTL24	Q5JXM2	366 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	HECTD2	Q5U5R9	776 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	METRNL	Q641Q3	311 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	KCNV1	Q6PIU1	500 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	TAS1R1	Q7RTX1	841 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	GPC2	Q8N158	579 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	OR5M3	Q8NGP4	307 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PNISR	Q8TF01	805 aa	Known RBP	5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	JDP2	Q8WYK2	163 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	MYEOV	Q96EZ4	313 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	HIST1H2AH	Q96KK5	128 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PSMD1	Q99460	953 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	HIST1H2AJ	Q99878	128 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PDCD2L	Q9BRP1	358 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	NYX	Q9GZU5	481 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	THG1L	Q9NWX6	298 aa	Known RBP	5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	SYBU	Q9NX95	663 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	MSRA	Q9UJ68	235 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	USP18	Q9UMW8	372 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ZNF541	Q9H0D2	1346 aa		5.17	□□□□□ -1.58
SNRNP40-205	ENST00000486941	LAMB4	A4D0S4	1761 aa		5.16	□□□□□ -1.58
SNRNP40-205	ENST00000486941	KDM3B	Q7LBC6	1761 aa		5.16	□□□□□ -1.58
SNRNP40-205	ENST00000486941	SNED1	Q8TER0	1413 aa		5.16	□□□□□ -1.58
SNRNP40-205	ENST00000486941	TRPM7	Q96QT4	1865 aa		5.16	□□□□□ -1.58
SNRNP40-205	ENST00000486941	WNT10B	O00744	389 aa		5.16	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms