RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 POU5F1Q01860 360 aaKnown RBP18.44■□□□□ 0.54
VIM-205ENST00000485947 SPAG1Q07617 926 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 ANKRD40Q6AI12 368 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 OTOP3Q7RTS5 596 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 ZBTB33Q86T24 672 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 NELFCDQ8IXH7 590 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 ACSF2Q96CM8 615 aaPredicted RBP18.44■□□□□ 0.54
VIM-205ENST00000485947 ACCSQ96QU6 501 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 APOL5Q9BWW9 433 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 KCNH6Q9H252 994 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 HSD3B7Q9H2F3 369 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 FANCLQ9NW38 375 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 CGNQ9P2M7 1197 aaKnown RBP18.44■□□□□ 0.54
VIM-205ENST00000485947 EXOC7Q9UPT5 735 aa18.44■□□□□ 0.54
VIM-205ENST00000485947 LIG4P49917 911 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 SNRPFP62306 86 aaKnown RBP18.43■□□□□ 0.54
VIM-205ENST00000485947 ZXDAP98168 799 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 NFIL3Q16649 462 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 PTPN21Q16825 1174 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 RTP2Q5QGT7 225 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 CDKAL1Q5VV42 579 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 TMC5Q6UXY8 1006 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 CCDC149Q6ZUS6 474 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 ANKS3Q6ZW76 656 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 FAM114A1Q8IWE2 563 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 CD302Q8IX05 232 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 UBALD2Q8IYN6 164 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 CSGALNACT2Q8N6G5 542 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 C12orf76Q8N812 135 aaPredicted RBP18.43■□□□□ 0.54
VIM-205ENST00000485947 CEP120Q8N960 986 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 TDRD5Q8NAT2 981 aaKnown RBP18.43■□□□□ 0.54
VIM-205ENST00000485947 GOLGA5Q8TBA6 731 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 LNX1Q8TBB1 728 aaPredicted RBP18.43■□□□□ 0.54
VIM-205ENST00000485947 BICD1Q96G01 975 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 DUSP9Q99956 384 aaKnown RBP18.43■□□□□ 0.54
VIM-205ENST00000485947 ANKFY1Q9P2R3 1169 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 BACE2Q9Y5Z0 518 aa18.43■□□□□ 0.54
VIM-205ENST00000485947 TRIOO75962 3097 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 USP34Q70CQ2 3546 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 HNRNPDLO14979 420 aaKnown RBP18.42■□□□□ 0.54
VIM-205ENST00000485947 SYN3O14994 580 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 TGM5O43548 720 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 XPOTO43592 962 aaKnown RBP18.42■□□□□ 0.54
VIM-205ENST00000485947 CYP3A5P20815 502 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 PAX3P23760 479 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 HOXA9P31269 272 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 CLCNKBP51801 687 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 OSTNP61366 133 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 FKBP3Q00688 224 aaKnown RBP18.42■□□□□ 0.54
VIM-205ENST00000485947 PSMD5Q16401 504 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 SLC10A6Q3KNW5 377 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 ZC2HC1CQ53FD0 456 aaPredicted RBP18.42■□□□□ 0.54
VIM-205ENST00000485947 GLRA4Q5JXX5 417 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 SLFN12LQ6IEE8 588 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 MAP4K3Q8IVH8 894 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 ZC3H3Q8IXZ2 948 aaKnown RBP18.42■□□□□ 0.54
VIM-205ENST00000485947 MFSD14AQ96MC6 490 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 CEP63Q96MT8 703 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 CXCL16Q9H2A7 254 aa18.42■□□□□ 0.54
VIM-205ENST00000485947 CCDC195A0A1B0GUA6 201 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 OGTO15294 1046 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 ADRB2P07550 413 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 POU2F2P09086 479 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 HNRNPA1P09651 372 aaKnown RBP eCLIP18.41■□□□□ 0.54
VIM-205ENST00000485947 HOXD13P35453 343 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 SIGLEC14Q08ET2 396 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 RAB33AQ14088 237 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 TRIM67Q6ZTA4 783 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 HS2ST1Q7LGA3 356 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 CEP57Q86XR8 500 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 KREMEN2Q8NCW0 462 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 ANKRD20A12PQ8NF67 263 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 RABGGTAQ92696 567 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 ZBTB45Q96K62 511 aaPredicted RBP18.41■□□□□ 0.54
VIM-205ENST00000485947 ZMAT2Q96NC0 199 aaKnown RBP18.41■□□□□ 0.54
VIM-205ENST00000485947 CLSTN3Q9BQT9 956 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 SRRTQ9BXP5 876 aaKnown RBP18.41■□□□□ 0.54
VIM-205ENST00000485947 WDR6Q9NNW5 1121 aaKnown RBP18.41■□□□□ 0.54
VIM-205ENST00000485947 SAMSN1Q9NSI8 373 aaKnown RBP18.41■□□□□ 0.54
VIM-205ENST00000485947 MTRRQ9UBK8 725 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 SORCS3Q9UPU3 1222 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 CFAP54Q96N23 3096 aa18.41■□□□□ 0.54
VIM-205ENST00000485947 A0A0B4J269 797 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 TTC26A0AVF1 554 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 C2CD4DB7Z1M9 353 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 PODXLO00592 558 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 ZMYND10O75800 440 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 CDK11BP21127 795 aaKnown RBP18.4■□□□□ 0.54
VIM-205ENST00000485947 RPL13P26373 211 aaKnown RBP18.4■□□□□ 0.54
VIM-205ENST00000485947 EEF1GP26641 437 aaKnown RBP18.4■□□□□ 0.54
VIM-205ENST00000485947 MATR3P43243 847 aaKnown RBP eCLIP18.4■□□□□ 0.54
VIM-205ENST00000485947 PLCB2Q00722 1185 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 MYBPC2Q14324 1141 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 CD300LGQ6UXG3 332 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 PALB2Q86YC2 1186 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 SYCP3Q8IZU3 236 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 HASPINQ8TF76 798 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 TMEM174Q8WUU8 243 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 B3GALT6Q96L58 329 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 OXCT2Q9BYC2 517 aaPredicted RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms