RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 LRRC15Q8TF66 581 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 AUTS2Q8WXX7 1259 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 HPS3Q969F9 1004 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 CCDC127Q96BQ5 260 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 TIGD1Q96MW7 591 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 GSDMAQ96QA5 445 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 POP1Q99575 1024 aaKnown RBP8.69□□□□□ -1.02
USP40-216ENST00000485943 ZBP1Q9H171 429 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 GOLPH3LQ9H4A5 285 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 GOLGA2P5Q9HBQ8 144 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 DZANK1Q9NVP4 752 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 HSPBP1Q9NZL4 362 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 CD207Q9UJ71 328 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 MAPK8IP1Q9UQF2 711 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 HPSEQ9Y251 543 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 DERAQ9Y315 318 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 LAMA3Q16787 3333 aa8.69□□□□□ -1.02
USP40-216ENST00000485943 BICDL2A1A5D9 508 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 FRMD3A2A2Y4 597 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 PRRG1O14668 218 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 PTGESO14684 152 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 CETN3O15182 167 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 HUS1O60921 280 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 KIF4AO95239 1232 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 FGFR1OPO95684 399 aaKnown RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 EDN1P05305 212 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 EPB41P11171 864 aaKnown RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 HOXB8P17481 243 aaPredicted RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 CYP3A5P20815 502 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 TAF6P49848 677 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 AFF1P51825 1210 aaKnown RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 CASP5P51878 434 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 YWHAHQ04917 246 aaPredicted RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 KCNH2Q12809 1159 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 BFSP1Q12934 665 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 KCNB1Q14721 858 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 ENOX2Q16206 610 aaKnown RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 SNRNP35Q16560 246 aaKnown RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 DUOXA2Q1HG44 320 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 CTXN3Q4LDR2 81 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 TCERG1LQ5VWI1 586 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 PTCRAQ6ISU1 281 aaPredicted RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 KLHL10Q6JEL2 608 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 ADGRD2Q7Z7M1 963 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 PALB2Q86YC2 1186 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 EFHBQ8N7U6 833 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 ZNF516Q92618 1163 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 SYAP1Q96A49 352 aaPredicted RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 C18orf25Q96B23 403 aaPredicted RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 RIPOR3Q96MK2 946 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 MMS19Q96T76 1030 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 CBWD1Q9BRT8 395 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 APOL5Q9BWW9 433 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 MMRN2Q9H8L6 949 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 PTPRHQ9HD43 1115 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 MIOSQ9NXC5 875 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 DPP3Q9NY33 737 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 DACH1Q9UI36 760 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 CPSF3Q9UKF6 684 aaKnown RBP8.68□□□□□ -1.02
USP40-216ENST00000485943 DSEQ9UL01 958 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 C2CD2Q9Y426 696 aa8.68□□□□□ -1.02
USP40-216ENST00000485943 C2orf71A6NGG8 1288 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 HIDE1A8MVS5 230 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 TISP43B9A030 160 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 SYN3O14994 580 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 INPPL1O15357 1258 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 STX10O60499 249 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 XYLBO75191 536 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 RHOBTB3O94955 611 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 LRG1P02750 347 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 NR3C1P04150 777 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 TPM2P07951 284 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 NFICP08651 508 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 P4HA1P13674 534 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 NR2F2P24468 414 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 DNAJB1P25685 340 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 CTHP32929 405 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 TNNC1P63316 161 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 RBP5P82980 135 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 TSPY1Q01534 308 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 POU5F1Q01860 360 aaKnown RBP8.67□□□□□ -1.02
USP40-216ENST00000485943 DSG1Q02413 1049 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 DSC1Q08554 894 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 KCNA1Q09470 495 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 HYAL1Q12794 435 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 CETN1Q12798 172 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 DPYDQ12882 1025 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 MYO7AQ13402 2215 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 PTPN14Q15678 1187 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 CAMK4Q16566 473 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 DUSP6Q16828 381 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 UPP1Q16831 310 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 SLC10A6Q3KNW5 377 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 CCDC40Q4G0X9 1142 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 PPM1LQ5SGD2 360 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 ATAT1Q5SQI0 421 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 RARS2Q5T160 578 aaKnown RBP8.67□□□□□ -1.02
USP40-216ENST00000485943 ZNF658Q5TYW1 1059 aaPredicted RBP8.67□□□□□ -1.02
USP40-216ENST00000485943 ISM2Q6H9L7 571 aa8.67□□□□□ -1.02
USP40-216ENST00000485943 CCDC149Q6ZUS6 474 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms