RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 CTXN3Q4LDR2 81 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 CYP4A22Q5TCH4 519 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 ZNF687Q8N1G0 1237 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 TMEM161BQ8NDZ6 487 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 SUSD3Q96L08 255 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 TBC1D32Q96NH3 1257 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 TCHPQ9BT92 498 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 CRISPLD1Q9H336 500 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 ZNF334Q9HCZ1 680 aaPredicted RBP15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 SLC38A7Q9NVC3 462 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 CEP72Q9P209 647 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 TIMM13Q9Y5L4 95 aaPredicted RBP15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 SCN1AP35498 2009 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 H7C4K7 107 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 SYN3O14994 580 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 OR4Q2P0C623 313 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 MAPTP10636 758 aaKnown RBP15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 PSMC3P17980 439 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 MCM4P33991 863 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 TNFSF9P41273 254 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 CXCL12P48061 93 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 SIM2Q14190 667 aaPredicted RBP15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 KRT79Q5XKE5 535 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 IQCEQ6IPM2 695 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 VITQ6UXI7 678 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 RNF19BQ6ZMZ0 732 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 MAMSTRQ6ZN01 415 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 TCEAL8Q8IYN2 117 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 DEPDC1BQ8WUY9 529 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 DDX12PQ92771 950 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 SMARCD2Q92925 531 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 DRC1Q96MC2 740 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 ASB16Q96NS5 453 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 DAXXQ9UER7 740 aaPredicted RBP15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 NUB1Q9Y5A7 615 aa15.11■□□□□ 0.01
SQSTM1-208ENST00000485412 NUP210Q8TEM1 1887 aaPredicted RBP15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 TCHHQ07283 1943 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 PPEF2O14830 753 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 ZNF263O14978 683 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 MICAL2O94851 1124 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 GUCY2CP25092 1073 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 VIPR2P41587 438 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 CDR1P51861 262 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 SATB1Q01826 763 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 TWF1Q12792 350 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 NOLC1Q14978 699 aaKnown RBP eCLIP15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 PRR23CQ6ZRP0 262 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 MAP4K3Q8IVH8 894 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 RSPRY1Q96DX4 576 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 ZSCAN31Q96LW9 406 aaPredicted RBP15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 ZNF512Q96ME7 567 aaPredicted RBP15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 TRPV5Q9NQA5 729 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 SEMA4GQ9NTN9 838 aa15.1■□□□□ 0.01
SQSTM1-208ENST00000485412 CHURC1-FNTBB4DL54 471 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 TOM1L1O75674 476 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 MYL4P12829 197 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 PLS3P13797 630 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 CCNE1P24864 410 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 RPL9P32969 192 aaKnown RBP15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 PRPHP41219 470 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 FNTBP49356 437 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 SLC12A3P55017 1021 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 ATP2C1P98194 919 aaPredicted RBP15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 LRRC32Q14392 662 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 ARSHQ5FYA8 562 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 HYIQ5T013 277 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 TPGS2Q68CL5 300 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 DTHD1Q6ZMT9 781 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 GPIHBP1Q8IV16 184 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 YAF2Q8IY57 180 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 TTC9BQ8N6N2 239 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 CSGALNACT1Q8TDX6 532 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 SPIRE2Q8WWL2 714 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 PGLYRP2Q96PD5 576 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 NTPCRQ9BSD7 190 aaKnown RBP15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 RAB34Q9BZG1 259 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 SLITRK6Q9H5Y7 841 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 ASAH2Q9NR71 780 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 SH2B1Q9NRF2 756 aaPredicted RBP15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 RBM19Q9Y4C8 960 aaKnown RBP15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 CHD8Q9HCK8 2581 aa15.09■□□□□ 0.01
SQSTM1-208ENST00000485412 DENND4CQ5VZ89 1909 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 FAM189A1O60320 539 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 CD2BP2O95400 341 aaKnown RBP15.08■□□□□ 0
SQSTM1-208ENST00000485412 CHRNB1P11230 501 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 CPB1P15086 417 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 MCL1Q07820 350 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 TEAD2Q15562 447 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 CSRP2Q16527 193 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 C8orf34Q49A92 452 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 STXBP5Q5T5C0 1151 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 ZNF280DQ6N043 979 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 SPEM1Q8N4L4 309 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 SYT2Q8N9I0 419 aaPredicted RBP15.08■□□□□ 0
SQSTM1-208ENST00000485412 LEMD2Q8NC56 503 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 SHKBP1Q8TBC3 707 aa15.08■□□□□ 0
SQSTM1-208ENST00000485412 ZSCAN18Q8TBC5 510 aaPredicted RBP15.08■□□□□ 0
SQSTM1-208ENST00000485412 TMEM209Q96SK2 561 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms