RNA–Protein interactions for RNA: ENST00000481929.5

HDAC6-224, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-224ENST00000481929 ARID3BQ8IVW6 561 aaPredicted RBP16.41■□□□□ 0.22
HDAC6-224ENST00000481929 DEPTORQ8TB45 409 aa16.41■□□□□ 0.22
HDAC6-224ENST00000481929 ZFYVE19Q96K21 471 aa16.41■□□□□ 0.22
HDAC6-224ENST00000481929 SCNM1Q9BWG6 230 aa16.41■□□□□ 0.22
HDAC6-224ENST00000481929 CCDC113Q9H0I3 377 aa16.41■□□□□ 0.22
HDAC6-224ENST00000481929 SLC38A7Q9NVC3 462 aa16.41■□□□□ 0.22
HDAC6-224ENST00000481929 PCDHA12Q9UN75 941 aa16.41■□□□□ 0.22
HDAC6-224ENST00000481929 YIPF1Q9Y548 306 aa16.41■□□□□ 0.22
HDAC6-224ENST00000481929 DSPP15924 2871 aaKnown RBP16.4■□□□□ 0.22
HDAC6-224ENST00000481929 ATG13O75143 517 aa16.4■□□□□ 0.22
HDAC6-224ENST00000481929 TOP3BO95985 862 aaKnown RBP16.4■□□□□ 0.22
HDAC6-224ENST00000481929 EDN1P05305 212 aa16.4■□□□□ 0.22
HDAC6-224ENST00000481929 XRCC6P12956 609 aaKnown RBP eCLIP16.4■□□□□ 0.22
HDAC6-224ENST00000481929 ATP2B1P20020 1258 aa16.4■□□□□ 0.22
HDAC6-224ENST00000481929 YARSP54577 528 aaKnown RBP16.4■□□□□ 0.22
HDAC6-224ENST00000481929 PLCB2Q00722 1185 aa16.4■□□□□ 0.22
HDAC6-224ENST00000481929 PLD1Q13393 1074 aa16.4■□□□□ 0.22
HDAC6-224ENST00000481929 GPIHBP1Q8IV16 184 aa16.4■□□□□ 0.22
HDAC6-224ENST00000481929 KCNB2Q92953 911 aa16.4■□□□□ 0.22
HDAC6-224ENST00000481929 TMEM209Q96SK2 561 aa16.4■□□□□ 0.22
HDAC6-224ENST00000481929 TOPORSQ9NS56 1045 aaPredicted RBP16.4■□□□□ 0.22
HDAC6-224ENST00000481929 SNX14Q9Y5W7 946 aa16.4■□□□□ 0.22
HDAC6-224ENST00000481929 TRIP11Q15643 1979 aa16.4■□□□□ 0.22
HDAC6-224ENST00000481929 AKAP13Q12802 2813 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 A0A087WWV3 80 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 RHOBTB1O94844 696 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 CAVIN2O95810 425 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 CEACAM1P13688 526 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 NAMPTP43490 491 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 CREB5Q02930 508 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 BMP2KLQ5H9B9 411 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 STXBP5Q5T5C0 1151 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 ATF7IP2Q5U623 682 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 RNF19BQ6ZMZ0 732 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 TMC8Q8IU68 726 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 CAMKK1Q8N5S9 505 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 APPL2Q8NEU8 664 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 BSNDQ8WZ55 320 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 CCDC94Q9BW85 323 aaPredicted RBP16.39■□□□□ 0.21
HDAC6-224ENST00000481929 DUSP15Q9H1R2 295 aaPredicted RBP16.39■□□□□ 0.21
HDAC6-224ENST00000481929 OBP2AQ9NY56 170 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 LAMA1P25391 3075 aa16.39■□□□□ 0.21
HDAC6-224ENST00000481929 XBP1P17861 261 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 CSRP1P21291 193 aaKnown RBP16.38■□□□□ 0.21
HDAC6-224ENST00000481929 PSMA5P28066 241 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 EPHB3P54753 998 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 TNK2Q07912 1038 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 KARSQ15046 597 aaKnown RBP16.38■□□□□ 0.21
HDAC6-224ENST00000481929 PPP2R5AQ15172 486 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 PTPAQ15257 358 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 CALCRLQ16602 461 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 ITPRIPL2Q3MIP1 535 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 SUSD3Q96L08 255 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 LRRC3BQ96PB8 259 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 LRRC3Q9BY71 257 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 TTC12Q9H892 705 aaPredicted RBP16.38■□□□□ 0.21
HDAC6-224ENST00000481929 TMEM9BQ9NQ34 198 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 TPCN1Q9ULQ1 816 aa16.38■□□□□ 0.21
HDAC6-224ENST00000481929 LNP1A1A4G5 178 aa16.37■□□□□ 0.21
HDAC6-224ENST00000481929 BCLAF3A2AJT9 711 aaKnown RBP16.37■□□□□ 0.21
HDAC6-224ENST00000481929 RPL9P32969 192 aaKnown RBP16.37■□□□□ 0.21
HDAC6-224ENST00000481929 MCM4P33991 863 aa16.37■□□□□ 0.21
HDAC6-224ENST00000481929 EFNA5P52803 228 aa16.37■□□□□ 0.21
HDAC6-224ENST00000481929 GRSF1Q12849 480 aaKnown RBP eCLIP16.37■□□□□ 0.21
HDAC6-224ENST00000481929 XKR4Q5GH76 650 aa16.37■□□□□ 0.21
HDAC6-224ENST00000481929 BPIFB1Q8TDL5 484 aa16.37■□□□□ 0.21
HDAC6-224ENST00000481929 OXER1Q8TDS5 423 aa16.37■□□□□ 0.21
HDAC6-224ENST00000481929 COL26A1Q96A83 441 aa16.37■□□□□ 0.21
HDAC6-224ENST00000481929 HHIPQ96QV1 700 aa16.37■□□□□ 0.21
HDAC6-224ENST00000481929 SETXQ7Z333 2677 aaKnown RBP16.36■□□□□ 0.21
HDAC6-224ENST00000481929 FGF19O95750 216 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 HSPA4P34932 840 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 GRM5P41594 1212 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 CACNB1Q02641 598 aaPredicted RBP16.36■□□□□ 0.21
HDAC6-224ENST00000481929 ARHGAP15Q53QZ3 475 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 TMEM196Q5HYL7 178 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 GPR158Q5T848 1215 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 NT5DC1Q5TFE4 455 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 ALKAL1Q6UXT8 129 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 CEP120Q8N960 986 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 BEST2Q8NFU1 509 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 DDX12PQ92771 950 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 MKNK1Q9BUB5 465 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 KIFC3Q9BVG8 833 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 DNAJC25Q9H1X3 360 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 ATXN3LQ9H3M9 355 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 THG1LQ9NWX6 298 aaKnown RBP16.36■□□□□ 0.21
HDAC6-224ENST00000481929 TNFSF13BQ9Y275 285 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 NEUROG3Q9Y4Z2 214 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 EML5Q05BV3 1969 aa16.36■□□□□ 0.21
HDAC6-224ENST00000481929 NUP210Q8TEM1 1887 aaPredicted RBP16.35■□□□□ 0.21
HDAC6-224ENST00000481929 TAF4O00268 1085 aa16.35■□□□□ 0.21
HDAC6-224ENST00000481929 CDC45O75419 566 aa16.35■□□□□ 0.21
HDAC6-224ENST00000481929 PRAMEF12O95522 483 aa16.35■□□□□ 0.21
HDAC6-224ENST00000481929 MARCKSP29966 332 aaPredicted RBP16.35■□□□□ 0.21
HDAC6-224ENST00000481929 TXKP42681 527 aa16.35■□□□□ 0.21
HDAC6-224ENST00000481929 ALDH1A3P47895 512 aa16.35■□□□□ 0.21
HDAC6-224ENST00000481929 MCM2P49736 904 aa16.35■□□□□ 0.21
HDAC6-224ENST00000481929 OSTNP61366 133 aa16.35■□□□□ 0.21
HDAC6-224ENST00000481929 TOB2Q14106 344 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms