RNA–Protein interactions for RNA: ENST00000473961.5

BRCA1-212, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 958 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-212ENST00000473961 PMS2P11Q13670 270 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 PUM3Q15397 648 aaKnown RBP5.07□□□□□ -1.6
BRCA1-212ENST00000473961 AFMIDQ63HM1 303 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 SEM1Q6ZVN7 128 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 LARP4Q71RC2 724 aaKnown RBP eCLIP5.07□□□□□ -1.6
BRCA1-212ENST00000473961 GPR155Q7Z3F1 870 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 SESTD1Q86VW0 696 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 PDSS2Q86YH6 399 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 TXLNBQ8N3L3 684 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 SLC16A11Q8NCK7 471 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 CCDC150Q8NCX0 1101 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 REPS2Q8NFH8 660 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 RABGGTAQ92696 567 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 ZNF566Q969W8 418 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 LCORQ96JN0 433 aaPredicted RBP5.07□□□□□ -1.6
BRCA1-212ENST00000473961 MRGPRX1Q96LB2 322 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 PWWP2AQ96N64 755 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 PAGR1Q9BTK6 254 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 SGPP1Q9BX95 441 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 KIAA1683Q9H0B3 1180 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 CASS4Q9NQ75 786 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.07□□□□□ -1.6
BRCA1-212ENST00000473961 CLCA2Q9UQC9 943 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 ZDHHC9Q9Y397 364 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 NR2E1Q9Y466 385 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 PCDHGB2Q9Y5G2 931 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 DGKBQ9Y6T7 804 aa5.07□□□□□ -1.6
BRCA1-212ENST00000473961 PMS2P1A4D2B8 440 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 TRIM43BA6NCK2 446 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 MBD3L4A6NDZ8 208 aaPredicted RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 MBD3L3A6NE82 208 aaPredicted RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 GOLGA6L3A6NEY3 463 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 BTN3A1O00481 513 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 KIAA0391O15091 583 aaKnown RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 PIP5K1CO60331 668 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 HAUS5O94927 633 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 CHEK2O96017 543 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 AMHP03971 560 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 RARBP10826 455 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 CD53P19397 219 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 PI3P19957 117 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 EEF1GP26641 437 aaKnown RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 KLRC1P26715 233 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 CASRP41180 1078 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 HSPA7P48741 367 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 RENBPP51606 427 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 ARFIP2P53365 341 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 NOMO3P69849 1222 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 ATP2C1P98194 919 aaPredicted RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 SATB1Q01826 763 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 PLP2Q04941 152 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 EXOSC9Q06265 439 aaKnown RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 NFYCQ13952 458 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 KIF22Q14807 665 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 AMOTQ4VCS5 1084 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 CCDC174Q6PII3 467 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 RNF44Q7L0R7 432 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 COL23A1Q86Y22 540 aaPredicted RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 LILRA3Q8N6C8 439 aaPredicted RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 SMCR8Q8TEV9 937 aaPredicted RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 ATXN2LQ8WWM7 1075 aaKnown RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 STON2Q8WXE9 905 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 TRIM43Q96BQ3 446 aaPredicted RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 SNX22Q96L94 193 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 GPR20Q99678 358 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 BDH2Q9BUT1 245 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 MRI1Q9BV20 369 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 C1orf43Q9BWL3 253 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 TTLL2Q9BWV7 592 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 DPH1Q9BZG8 443 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 MAF1Q9H063 256 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 A1CFQ9NQ94 594 aaKnown RBP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 TM7SF3Q9NS93 570 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 JKAMPQ9P055 326 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 MYO1AQ9UBC5 1043 aa5.06□□□□□ -1.6
BRCA1-212ENST00000473961 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.06□□□□□ -1.6
BRCA1-212ENST00000473961 SH3D21A4FU49 640 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 CLCA1A8K7I4 914 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 SLC26A4O43511 780 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 MATN4O95460 622 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 AHSGP02765 367 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 CSTBP04080 98 aaKnown RBP5.05□□□□□ -1.6
BRCA1-212ENST00000473961 GJB1P08034 283 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 MYL4P12829 197 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 XRCC6P12956 609 aaKnown RBP eCLIP5.05□□□□□ -1.6
BRCA1-212ENST00000473961 FPR1P21462 350 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 FGFR2P21802 821 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 IL6STP40189 918 aaPredicted RBP5.05□□□□□ -1.6
BRCA1-212ENST00000473961 RPS16P62249 146 aaKnown RBP5.05□□□□□ -1.6
BRCA1-212ENST00000473961 KIAA2012Q0VF49 1180 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 FBXO38Q6PIJ6 1188 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 CATSPERGQ6ZRH7 1159 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 ZNF365Q70YC5 407 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 ANKRD18AQ8IVF6 992 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 YAF2Q8IY57 180 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 MYCT1Q8N699 235 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 RNF152Q8N8N0 203 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 TEX19Q8NA77 164 aa5.05□□□□□ -1.6
BRCA1-212ENST00000473961 GIMAP8Q8ND71 665 aaPredicted RBP5.05□□□□□ -1.6
BRCA1-212ENST00000473961 OR14K1Q8NGZ2 314 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms