RNA–Protein interactions for RNA: ENST00000472305.1

SEC16A-209, Transcript of SEC16 homolog A, endoplasmic reticulum export factor, human

TSL 3

Gene SEC16A, Length 537 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEC16A-209	ENST00000472305	PDCD11	Q14690	1871 aa	Known RBP	13.86	□□□□□ -0.19
SEC16A-209	ENST00000472305	BECN2	A8MW95	431 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	TMEM189-UBE2V1	I3L0A0	370 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	AFP	P02771	609 aa	Known RBP	13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	GTF2H1	P32780	548 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	IRS1	P35568	1242 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	MXI1	P50539	228 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	AP3M2	P53677	418 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	ERVFC1	P60507	584 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	NCOA4	Q13772	614 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	KRT39	Q6A163	491 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	DDX53	Q86TM3	631 aa	Known RBP	13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	FAM114A1	Q8IWE2	563 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	SENP8	Q96LD8	212 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	TUBGCP2	Q9BSJ2	902 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	XYLT2	Q9H1B5	865 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	VPS16	Q9H269	839 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	APOBEC3G	Q9HC16	384 aa	Known RBP	13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	LIMA1	Q9UHB6	759 aa	Known RBP	13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	RAPGEFL1	Q9UHV5	662 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	POLI	Q9UNA4	740 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	NUB1	Q9Y5A7	615 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	PIEZO1	Q92508	2521 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	CHD9	Q3L8U1	2897 aa		13.85	□□□□□ -0.19
SEC16A-209	ENST00000472305	PRKCSH	P14314	528 aa	Predicted RBP	13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	EEF1G	P26641	437 aa	Known RBP	13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	TKT	P29401	623 aa	Known RBP	13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	PPM1A	P35813	382 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	AARS	P49588	968 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	TAF6	P49848	677 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	COPB1	P53618	953 aa	Known RBP	13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	TRPC3	Q13507	836 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	ADGRE1	Q14246	886 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	MAN2A1	Q16706	1144 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	PTPN21	Q16825	1174 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	VWA3B	Q502W6	1294 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	RTP2	Q5QGT7	225 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	ZNF697	Q5TEC3	545 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	FAM171A1	Q5VUB5	890 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	DSTYK	Q6XUX3	929 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	USP37	Q86T82	979 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	VPS52	Q8N1B4	723 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	HPDL	Q96IR7	371 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	C11orf84	Q9BUA3	381 aa	Predicted RBP	13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	HERC2P3	Q9BVR0	1158 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	RBSN	Q9H1K0	784 aa		13.84	□□□□□ -0.19
SEC16A-209	ENST00000472305	KPNA7	A9QM74	516 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	TNFRSF10A	O00220	468 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	STX10	O60499	249 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	SOD2	P04179	222 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	CDK11B	P21127	795 aa	Known RBP	13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	HOXD11	P31277	338 aa	Predicted RBP	13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	PIK3CA	P42336	1068 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	MYL7	Q01449	175 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	APBA1	Q02410	837 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	KRT17	Q04695	432 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	LRMP	Q12912	555 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	OSTM1	Q86WC4	334 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	CEP57	Q86XR8	500 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	LRRC52	Q8N7C0	313 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	LMO3	Q8TAP4	145 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	TATDN2	Q93075	761 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	SUSD3	Q96L08	255 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	CDX2	Q99626	313 aa	Predicted RBP	13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	CRACR2A	Q9BSW2	395 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	ZBP1	Q9H171	429 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	CHST7	Q9NS84	486 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	RAB20	Q9NX57	234 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	COQ4	Q9Y3A0	265 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	SNX9	Q9Y5X1	595 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	SCN1A	P35498	2009 aa		13.83	□□□□□ -0.2
SEC16A-209	ENST00000472305	TMEM265	A0A087WTH1	108 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305		M0QZQ0	153 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	C2CD2L	O14523	706 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	CYB561D2	O14569	222 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	FSCN2	O14926	492 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	HCRT	O43612	131 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	CAVIN2	O95810	425 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	ASS1	P00966	412 aa	Known RBP	13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	FGFR3	P22607	806 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	RAP1GAP	P47736	663 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	KCNMA1	Q12791	1236 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	ZNF699	Q32M78	642 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	SV2C	Q496J9	727 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	KIAA0319	Q5VV43	1072 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	PLPP4	Q5VZY2	271 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	WSCD1	Q658N2	575 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	EHBP1	Q8NDI1	1231 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	FBXL13	Q8NEE6	735 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	ZNF560	Q96MR9	790 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	SDCBP2	Q9H190	292 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	NDST4	Q9H3R1	872 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	NXF1	Q9UBU9	619 aa	Known RBP	13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	PCDHB8	Q9UN66	801 aa		13.82	□□□□□ -0.2
SEC16A-209	ENST00000472305	L1RE1	Q9UN81	338 aa		13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms