RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 HPS3Q969F9 1004 aa8.8□□□□□ -1
USP48-207ENST00000471752 DNAJC19Q96DA6 116 aa8.8□□□□□ -1
USP48-207ENST00000471752 BICD1Q96G01 975 aa8.8□□□□□ -1
USP48-207ENST00000471752 BORCS6Q96GS4 357 aa8.8□□□□□ -1
USP48-207ENST00000471752 CDK5RAP3Q96JB5 506 aa8.8□□□□□ -1
USP48-207ENST00000471752 UROC1Q96N76 676 aa8.8□□□□□ -1
USP48-207ENST00000471752 RTP3Q9BQQ7 232 aa8.8□□□□□ -1
USP48-207ENST00000471752 STRA6Q9BX79 667 aa8.8□□□□□ -1
USP48-207ENST00000471752 DNAJC25Q9H1X3 360 aa8.8□□□□□ -1
USP48-207ENST00000471752 ZNF334Q9HCZ1 680 aaPredicted RBP8.8□□□□□ -1
USP48-207ENST00000471752 ARHGEF3Q9NR81 526 aa8.8□□□□□ -1
USP48-207ENST00000471752 SLC2A4RGQ9NR83 387 aa8.8□□□□□ -1
USP48-207ENST00000471752 TOPORSQ9NS56 1045 aaPredicted RBP8.8□□□□□ -1
USP48-207ENST00000471752 DPP7Q9UHL4 492 aa8.8□□□□□ -1
USP48-207ENST00000471752 CPSF3Q9UKF6 684 aaKnown RBP8.8□□□□□ -1
USP48-207ENST00000471752 NUB1Q9Y5A7 615 aa8.8□□□□□ -1
USP48-207ENST00000471752 INSL5Q9Y5Q6 135 aa8.8□□□□□ -1
USP48-207ENST00000471752 PROB1E7EW31 1015 aa8.79□□□□□ -1
USP48-207ENST00000471752 K7ENM7 598 aa8.79□□□□□ -1
USP48-207ENST00000471752 PRRG1O14668 218 aa8.79□□□□□ -1
USP48-207ENST00000471752 HCRTO43612 131 aa8.79□□□□□ -1
USP48-207ENST00000471752 TRAPPC3O43617 180 aa8.79□□□□□ -1
USP48-207ENST00000471752 TRAK2O60296 914 aa8.79□□□□□ -1
USP48-207ENST00000471752 XYLBO75191 536 aa8.79□□□□□ -1
USP48-207ENST00000471752 FAM13AO94988 1023 aa8.79□□□□□ -1
USP48-207ENST00000471752 MYL4P12829 197 aa8.79□□□□□ -1
USP48-207ENST00000471752 PTPN2P17706 415 aa8.79□□□□□ -1
USP48-207ENST00000471752 LRPAP1P30533 357 aa8.79□□□□□ -1
USP48-207ENST00000471752 HOXA9P31269 272 aa8.79□□□□□ -1
USP48-207ENST00000471752 AARSP49588 968 aaKnown RBP eCLIP8.79□□□□□ -1
USP48-207ENST00000471752 LILRA4P59901 499 aa8.79□□□□□ -1
USP48-207ENST00000471752 GTF2BQ00403 316 aa8.79□□□□□ -1
USP48-207ENST00000471752 CREMQ03060 361 aa8.79□□□□□ -1
USP48-207ENST00000471752 TWF1Q12792 350 aa8.79□□□□□ -1
USP48-207ENST00000471752 DUSP4Q13115 394 aa8.79□□□□□ -1
USP48-207ENST00000471752 TEAD2Q15562 447 aa8.79□□□□□ -1
USP48-207ENST00000471752 FOXD4L5Q5VV16 416 aaPredicted RBP8.79□□□□□ -1
USP48-207ENST00000471752 SFR1Q86XK3 245 aa8.79□□□□□ -1
USP48-207ENST00000471752 ZNF687Q8N1G0 1237 aa8.79□□□□□ -1
USP48-207ENST00000471752 DCLK2Q8N568 766 aa8.79□□□□□ -1
USP48-207ENST00000471752 OR10T2Q8NGX3 314 aa8.79□□□□□ -1
USP48-207ENST00000471752 TTC8Q8TAM2 541 aa8.79□□□□□ -1
USP48-207ENST00000471752 SHKBP1Q8TBC3 707 aa8.79□□□□□ -1
USP48-207ENST00000471752 FOXD4L4Q8WXT5 416 aaPredicted RBP8.79□□□□□ -1
USP48-207ENST00000471752 CHAMP1Q96JM3 812 aa8.79□□□□□ -1
USP48-207ENST00000471752 USP28Q96RU2 1077 aa8.79□□□□□ -1
USP48-207ENST00000471752 MSTO1Q9BUK6 570 aa8.79□□□□□ -1
USP48-207ENST00000471752 DDX23Q9BUQ8 820 aaKnown RBP8.79□□□□□ -1
USP48-207ENST00000471752 C17orf75Q9HAS0 396 aa8.79□□□□□ -1
USP48-207ENST00000471752 HEBP1Q9NRV9 189 aa8.79□□□□□ -1
USP48-207ENST00000471752 SLC38A7Q9NVC3 462 aa8.79□□□□□ -1
USP48-207ENST00000471752 TFIP11Q9UBB9 837 aaKnown RBP8.79□□□□□ -1
USP48-207ENST00000471752 PCDHB8Q9UN66 801 aa8.79□□□□□ -1
USP48-207ENST00000471752 MTMR6Q9Y217 621 aa8.79□□□□□ -1
USP48-207ENST00000471752 SIT1Q9Y3P8 196 aa8.79□□□□□ -1
USP48-207ENST00000471752 STK24Q9Y6E0 443 aa8.79□□□□□ -1
USP48-207ENST00000471752 GOLGA8IPA6NC78 632 aa8.78□□□□□ -1
USP48-207ENST00000471752 GOLGA8JA6NMD2 632 aa8.78□□□□□ -1
USP48-207ENST00000471752 FAM170BA6NMN3 283 aa8.78□□□□□ -1
USP48-207ENST00000471752 TULP1O00294 542 aaPredicted RBP8.78□□□□□ -1
USP48-207ENST00000471752 PIRO00625 290 aa8.78□□□□□ -1
USP48-207ENST00000471752 HNRNPDLO14979 420 aaKnown RBP8.78□□□□□ -1
USP48-207ENST00000471752 SYN3O14994 580 aa8.78□□□□□ -1
USP48-207ENST00000471752 OGTO15294 1046 aa8.78□□□□□ -1
USP48-207ENST00000471752 OAZ2O95190 189 aa8.78□□□□□ -1
USP48-207ENST00000471752 PIGRP01833 764 aa8.78□□□□□ -1
USP48-207ENST00000471752 TARSP26639 723 aaKnown RBP8.78□□□□□ -1
USP48-207ENST00000471752 CASP1P29466 404 aa8.78□□□□□ -1
USP48-207ENST00000471752 HOXD13P35453 343 aa8.78□□□□□ -1
USP48-207ENST00000471752 LONP1P36776 959 aaKnown RBP8.78□□□□□ -1
USP48-207ENST00000471752 LIG4P49917 911 aa8.78□□□□□ -1
USP48-207ENST00000471752 STARD6P59095 220 aa8.78□□□□□ -1
USP48-207ENST00000471752 FOXD4L6Q3SYB3 417 aaPredicted RBP8.78□□□□□ -1
USP48-207ENST00000471752 SPATA1Q5VX52 437 aa8.78□□□□□ -1
USP48-207ENST00000471752 C9orf57Q5W0N0 161 aa8.78□□□□□ -1
USP48-207ENST00000471752 TSSK4Q6SA08 328 aa8.78□□□□□ -1
USP48-207ENST00000471752 FOXD4L3Q6VB84 417 aaPredicted RBP8.78□□□□□ -1
USP48-207ENST00000471752 ZNF720Q7Z2F6 126 aa8.78□□□□□ -1
USP48-207ENST00000471752 TMC8Q8IU68 726 aa8.78□□□□□ -1
USP48-207ENST00000471752 MAP4K3Q8IVH8 894 aa8.78□□□□□ -1
USP48-207ENST00000471752 EFCAB13Q8IY85 973 aa8.78□□□□□ -1
USP48-207ENST00000471752 ADSSL1Q8N142 457 aa8.78□□□□□ -1
USP48-207ENST00000471752 BEST2Q8NFU1 509 aa8.78□□□□□ -1
USP48-207ENST00000471752 LARP4BQ92615 738 aaKnown RBP8.78□□□□□ -1
USP48-207ENST00000471752 SAAL1Q96ER3 474 aa8.78□□□□□ -1
USP48-207ENST00000471752 CALML4Q96GE6 196 aa8.78□□□□□ -1
USP48-207ENST00000471752 SENP8Q96LD8 212 aa8.78□□□□□ -1
USP48-207ENST00000471752 PRRX2Q99811 253 aa8.78□□□□□ -1
USP48-207ENST00000471752 MKNK1Q9BUB5 465 aa8.78□□□□□ -1
USP48-207ENST00000471752 TIPINQ9BVW5 301 aa8.78□□□□□ -1
USP48-207ENST00000471752 BACH2Q9BYV9 841 aa8.78□□□□□ -1
USP48-207ENST00000471752 PARVGQ9HBI0 331 aa8.78□□□□□ -1
USP48-207ENST00000471752 TMLHEQ9NVH6 421 aa8.78□□□□□ -1
USP48-207ENST00000471752 C2orf42Q9NWW7 574 aa8.78□□□□□ -1
USP48-207ENST00000471752 LARSQ9P2J5 1176 aaKnown RBP8.78□□□□□ -1
USP48-207ENST00000471752 AFF4Q9UHB7 1163 aaKnown RBP8.78□□□□□ -1
USP48-207ENST00000471752 SRPRBQ9Y5M8 271 aaKnown RBP8.78□□□□□ -1
USP48-207ENST00000471752 KANSL1LA0AUZ9 987 aa8.77□□□□□ -1.01
USP48-207ENST00000471752 ANO9A1A5B4 782 aa8.77□□□□□ -1.01
USP48-207ENST00000471752 H7C4K7 107 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms