RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 CXorf38Q8TB03 319 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 TMC2Q8TDI7 906 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 PARD3BQ8TEW8 1205 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 HDAC7Q8WUI4 952 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 CCDC127Q96BQ5 260 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 SENP8Q96LD8 212 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 TSG101Q99816 390 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 CLSTN3Q9BQT9 956 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 OXCT2Q9BYC2 517 aaPredicted RBP16.5■□□□□ 0.23
SDC3-203ENST00000471567 MTMR12Q9C0I1 747 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 AGAP1Q9UPQ3 857 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 FAM50BQ9Y247 325 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 VWA8A3KMH1 1905 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 EYSQ5T1H1 3165 aa16.5■□□□□ 0.23
SDC3-203ENST00000471567 PTPRJQ12913 1337 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 REV3LO60673 3130 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 SPTLC1O15269 473 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 TBC1D4O60343 1298 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 OAZ2O95190 189 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 ITGB3P05106 788 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 RPL17P18621 184 aaKnown RBP16.49■□□□□ 0.23
SDC3-203ENST00000471567 BMP6P22004 513 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 POLR2BP30876 1174 aaKnown RBP16.49■□□□□ 0.23
SDC3-203ENST00000471567 PSMC2P35998 433 aaKnown RBP16.49■□□□□ 0.23
SDC3-203ENST00000471567 CLDN10P78369 228 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 LRRC63Q05C16 580 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 ENPEPQ07075 957 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 RAB33AQ14088 237 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 SV2CQ496J9 727 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 TJAP1Q5JTD0 557 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 CEP135Q66GS9 1140 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 LMBRD2Q68DH5 695 aaPredicted RBP16.49■□□□□ 0.23
SDC3-203ENST00000471567 ISM2Q6H9L7 571 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 LILRA6Q6PI73 481 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 FOXR2Q6PJQ5 311 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 USP37Q86T82 979 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 PRUNE2Q8WUY3 3088 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 BORCS6Q96GS4 357 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 GZF1Q9H116 711 aaPredicted RBP16.49■□□□□ 0.23
SDC3-203ENST00000471567 PLEKHA4Q9H4M7 779 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 SIX4Q9UIU6 781 aa16.49■□□□□ 0.23
SDC3-203ENST00000471567 R3HCC1Q9Y3T6 440 aaKnown RBP16.49■□□□□ 0.23
SDC3-203ENST00000471567 KPNA7A9QM74 516 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 PPP1R3GB7ZBB8 358 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 BIN1O00499 593 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 CETN3O15182 167 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 CYP11A1P05108 521 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 ODC1P11926 461 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 BMP1P13497 986 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 CCNE1P24864 410 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 MCCD1P59942 119 aaPredicted RBP16.48■□□□□ 0.23
SDC3-203ENST00000471567 FKBP3Q00688 224 aaKnown RBP16.48■□□□□ 0.23
SDC3-203ENST00000471567 YWHAHQ04917 246 aaPredicted RBP16.48■□□□□ 0.23
SDC3-203ENST00000471567 SMAD4Q13485 552 aaKnown RBP16.48■□□□□ 0.23
SDC3-203ENST00000471567 PTCRAQ6ISU1 281 aaPredicted RBP16.48■□□□□ 0.23
SDC3-203ENST00000471567 SLC8B1Q6J4K2 584 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 ZNF280DQ6N043 979 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 SYCE2Q6PIF2 218 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 INTS8Q75QN2 995 aaKnown RBP16.48■□□□□ 0.23
SDC3-203ENST00000471567 TRAPPC11Q7Z392 1133 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 PALB2Q86YC2 1186 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 SMRP1Q8NCR6 262 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 PLEKHO2Q8TD55 490 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 POP1Q99575 1024 aaKnown RBP16.48■□□□□ 0.23
SDC3-203ENST00000471567 MKNK1Q9BUB5 465 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 NUP62CLQ9H1M0 184 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 S1PR5Q9H228 398 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 DSEQ9UL01 958 aa16.48■□□□□ 0.23
SDC3-203ENST00000471567 GRXCR2A6NFK2 248 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 CYB561D2O14569 222 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 IKBKBO14920 756 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 MBTPS2O43462 519 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 TGM5O43548 720 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 AKAP3O75969 853 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 KRT19P08727 400 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 CD44P16070 742 aaKnown RBP16.47■□□□□ 0.23
SDC3-203ENST00000471567 OR1D2P34982 312 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 KCNQ1P51787 676 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 ITIH3Q06033 890 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 MYO1EQ12965 1108 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 CTXN3Q4LDR2 81 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 ANKRD40Q6AI12 368 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 GLYCTKQ8IVS8 523 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 ZC3H3Q8IXZ2 948 aaKnown RBP16.47■□□□□ 0.23
SDC3-203ENST00000471567 FAM186BQ8IYM0 893 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 ZNF516Q92618 1163 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 GDAP2Q9NXN4 497 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 FBXL5Q9UKA1 691 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 CDY1Q9Y6F8 540 aa16.47■□□□□ 0.23
SDC3-203ENST00000471567 SCN1AP35498 2009 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 BICDL2A1A5D9 508 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 LRRIQ3A6PVS8 624 aaPredicted RBP16.46■□□□□ 0.23
SDC3-203ENST00000471567 ADAM12O43184 909 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 KRT13P13646 458 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 VAMP7P51809 220 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 PMS1P54277 932 aaKnown RBP16.46■□□□□ 0.23
SDC3-203ENST00000471567 CLUL1Q15846 466 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 OVOS1Q6IE37 1185 aa16.46■□□□□ 0.23
SDC3-203ENST00000471567 RSPO2Q6UXX9 243 aaPredicted RBP16.46■□□□□ 0.23
SDC3-203ENST00000471567 RTL10Q7L3V2 364 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms