RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CNOT10Q9H9A5 744 aaKnown RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 KLHL11Q9NVR0 708 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 WHRNQ9P202 907 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 DDX20Q9UHI6 824 aaKnown RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 RASGRF2O14827 1237 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 KIAA0754O94854 1291 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 ARIH2O95376 493 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 TCF4P15884 667 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 ITIH2P19823 946 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 MMP13P45452 471 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 ITGA8P53708 1063 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 MYL6P60660 151 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 ADCY2Q08462 1091 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 AUHQ13825 339 aaKnown RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 NEDD9Q14511 834 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 ZNF568Q3ZCX4 644 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 ERMARDQ5T6L9 678 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 FAM160B1Q5W0V3 765 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 RHBDF2Q6PJF5 856 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 GADL1Q6ZQY3 521 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 PRUNE1Q86TP1 453 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 SPATS2Q86XZ4 545 aaKnown RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 BRSK2Q8IWQ3 736 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 RHOT1Q8IXI2 618 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 OTUD6BQ8N6M0 293 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 NLGN2Q8NFZ4 835 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 SEPT1Q8WYJ6 367 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 SNF8Q96H20 258 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 VCPIP1Q96JH7 1222 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 XPO6Q96QU8 1125 aaKnown RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 MRPL47Q9HD33 250 aaKnown RBP9.51□□□□□ -0.89
SYNE1-217ENST00000466159 PPP2R3BQ9Y5P8 575 aa9.51□□□□□ -0.89
SYNE1-217ENST00000466159 PCNTO95613 3336 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 PSTPIP1O43586 416 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 ASS1P00966 412 aaKnown RBP9.5□□□□□ -0.89
SYNE1-217ENST00000466159 PGK2P07205 417 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 POTEJP0CG39 1038 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 ADCY8P40145 1251 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 PTK6Q13882 451 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 LONRF1Q17RB8 773 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 HSDL1Q3SXM5 330 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 CCDC38Q502W7 563 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 RNF187Q5TA31 235 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-217ENST00000466159 C6orf89Q6UWU4 347 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 METTL7BQ6UX53 244 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 ZPBP2Q6X784 338 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 MICALCLQ6ZW33 695 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 RNF149Q8NC42 400 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 ATL2Q8NHH9 583 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 FEZF2Q8TBJ5 459 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 MAIP1Q8WWC4 291 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 TMEM109Q9BVC6 243 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 OSBPL8Q9BZF1 889 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 IMPG2Q9BZV3 1241 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 CD2APQ9Y5K6 639 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 PI4K2BG5E9Z4 385 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 IRF6O14896 467 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 TOM1L1O75674 476 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 GAS8O95995 478 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 AGTP01019 485 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 GJB1P08034 283 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 BRD2P25440 801 aaKnown RBP9.5□□□□□ -0.89
SYNE1-217ENST00000466159 ZNF132P52740 706 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 C1QBPQ07021 282 aaKnown RBP9.5□□□□□ -0.89
SYNE1-217ENST00000466159 LAMTOR4Q0VGL1 99 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 TTC31Q49AM3 519 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-217ENST00000466159 TRMT10CQ7L0Y3 403 aaKnown RBP9.5□□□□□ -0.89
SYNE1-217ENST00000466159 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.5□□□□□ -0.89
SYNE1-217ENST00000466159 KATNAL2Q8IYT4 538 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 UBR7Q8N806 425 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 GRK7Q8WTQ7 553 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 ZBTB10Q96DT7 871 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 ACO2Q99798 780 aaKnown RBP9.5□□□□□ -0.89
SYNE1-217ENST00000466159 MRPL4Q9BYD3 311 aaKnown RBP9.5□□□□□ -0.89
SYNE1-217ENST00000466159 CCDC113Q9H0I3 377 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 PARVAQ9NVD7 372 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 NEU2Q9Y3R4 380 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 SCINQ9Y6U3 715 aa9.5□□□□□ -0.89
SYNE1-217ENST00000466159 ATXN2Q99700 1313 aaKnown RBP9.49□□□□□ -0.89
SYNE1-217ENST00000466159 ZBTB42B2RXF5 422 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 CPP00450 1065 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 WEE2P0C1S8 567 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 KRT10P13645 584 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 ATF2P15336 505 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 MMP8P22894 467 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 MAN1A1P33908 653 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 CDR1P51861 262 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 OSTNP61366 133 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 ZNF252P-AS1Q0IIN9 211 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 CCNG2Q16589 344 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 KYNUQ16719 465 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 TNFAIP8L3Q5GJ75 292 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 CPLX4Q7Z7G2 160 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 CDR2LQ86X02 465 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-217ENST00000466159 WDR49Q8IV35 697 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 GPC2Q8N158 579 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 TRAPPC12Q8WVT3 735 aa9.49□□□□□ -0.89
SYNE1-217ENST00000466159 ATXN2LQ8WWM7 1075 aaKnown RBP9.49□□□□□ -0.89
SYNE1-217ENST00000466159 KAT2BQ92831 832 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms