RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MRPL58Q14197 206 aaKnown RBP12.81□□□□□ -0.36
VPS52-213ENST00000461743 SMAD2Q15796 467 aaKnown RBP12.81□□□□□ -0.36
VPS52-213ENST00000461743 ZCWPW2Q504Y3 356 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 VARS2Q5ST30 1063 aaKnown RBP12.81□□□□□ -0.36
VPS52-213ENST00000461743 FOXR2Q6PJQ5 311 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 CYP26C1Q6V0L0 522 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 CEP57Q86XR8 500 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 TRIML1Q8N9V2 468 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 CMASQ8NFW8 434 aaPredicted RBP12.81□□□□□ -0.36
VPS52-213ENST00000461743 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.81□□□□□ -0.36
VPS52-213ENST00000461743 SPATA18Q8TC71 538 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 NOC3LQ8WTT2 800 aaKnown RBP12.81□□□□□ -0.36
VPS52-213ENST00000461743 B3GALT6Q96L58 329 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 MFSD14AQ96MC6 490 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 NECTIN4Q96NY8 510 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 FNBP1Q96RU3 617 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 PDE11AQ9HCR9 933 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 FBXW11Q9UKB1 542 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 FRMD4BQ9Y2L6 1034 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 DENND4CQ5VZ89 1909 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 DOCK6Q96HP0 2047 aa12.81□□□□□ -0.36
VPS52-213ENST00000461743 CYP11A1P05108 521 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 POU2F2P09086 479 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 BMP1P13497 986 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 EPCAMP16422 314 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 NR2F2P24468 414 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 KCNQ1P51787 676 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 GUCY2FP51841 1108 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 WNT7BP56706 349 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 YWHAHQ04917 246 aaPredicted RBP12.8□□□□□ -0.36
VPS52-213ENST00000461743 LRRC63Q05C16 580 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 RAB33AQ14088 237 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 DUOXA2Q1HG44 320 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 SLC8B1Q6J4K2 584 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 CES5AQ6NT32 575 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 LLGL2Q6P1M3 1020 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 PRSS55Q6UWB4 352 aaPredicted RBP12.8□□□□□ -0.36
VPS52-213ENST00000461743 C15orf39Q6ZRI6 1047 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 C1orf127Q8N9H9 656 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 SUSD6Q92537 303 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 POP1Q99575 1024 aaKnown RBP12.8□□□□□ -0.36
VPS52-213ENST00000461743 TSG101Q99816 390 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 CLSTN3Q9BQT9 956 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 MKNK1Q9BUB5 465 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 MTMR12Q9C0I1 747 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 MAN1C1Q9NR34 630 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 MAFFQ9ULX9 164 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 R3HCC1Q9Y3T6 440 aaKnown RBP12.8□□□□□ -0.36
VPS52-213ENST00000461743 OBSL1O75147 1896 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 MYH10P35580 1976 aa12.8□□□□□ -0.36
VPS52-213ENST00000461743 I3L4J1 428 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 PSMA7O14818 248 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 TGM5O43548 720 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 TBC1D4O60343 1298 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 OAZ2O95190 189 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 ITGB3P05106 788 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 POLR2BP30876 1174 aaKnown RBP12.79□□□□□ -0.36
VPS52-213ENST00000461743 HOXA9P31269 272 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 MTHFRP42898 656 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 CLDN10P78369 228 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 RBP5P82980 135 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 CENPPQ6IPU0 288 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 LILRA6Q6PI73 481 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 SYCE2Q6PIF2 218 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 DSTYKQ6XUX3 929 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 INTS8Q75QN2 995 aaKnown RBP12.79□□□□□ -0.36
VPS52-213ENST00000461743 ZC3H3Q8IXZ2 948 aaKnown RBP12.79□□□□□ -0.36
VPS52-213ENST00000461743 CXorf38Q8TB03 319 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 TMC2Q8TDI7 906 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 RIPOR3Q96MK2 946 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 ADAM7Q9H2U9 754 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 ZDHHC7Q9NXF8 308 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 CDY1Q9Y6F8 540 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 GREB1Q4ZG55 1949 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 NOTCH4Q99466 2003 aa12.79□□□□□ -0.36
VPS52-213ENST00000461743 OR6C75A6NL08 312 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 SPDYE4A6NLX3 237 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 PPEF2O14830 753 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 SLC16A3O15427 465 aaKnown RBP12.78□□□□□ -0.36
VPS52-213ENST00000461743 STAU1O95793 577 aaKnown RBP12.78□□□□□ -0.36
VPS52-213ENST00000461743 DLATP10515 647 aaKnown RBP12.78□□□□□ -0.36
VPS52-213ENST00000461743 RPL17P18621 184 aaKnown RBP12.78□□□□□ -0.36
VPS52-213ENST00000461743 TNNI1P19237 187 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 PRCPP42785 496 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 RBM10P98175 930 aaKnown RBP12.78□□□□□ -0.36
VPS52-213ENST00000461743 MYO1EQ12965 1108 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 MORC3Q14149 939 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 LIN9Q5TKA1 542 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 TPGS2Q68CL5 300 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 OVOS1Q6IE37 1185 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 SMYD4Q8IYR2 804 aaPredicted RBP12.78□□□□□ -0.36
VPS52-213ENST00000461743 ADSSL1Q8N142 457 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 TMEM86AQ8N2M4 240 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 ADAMTS19Q8TE59 1207 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 PARD3BQ8TEW8 1205 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 DHTKD1Q96HY7 919 aaPredicted RBP12.78□□□□□ -0.36
VPS52-213ENST00000461743 SENP8Q96LD8 212 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 S1PR5Q9H228 398 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 CLSTN2Q9H4D0 955 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 GDAP2Q9NXN4 497 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms