RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 TWF2Q6IBS0 349 aaKnown RBP12.62□□□□□ -0.39
UBR4-205ENST00000417040 ARID3BQ8IVW6 561 aaPredicted RBP12.62□□□□□ -0.39
UBR4-205ENST00000417040 BEST2Q8NFU1 509 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 CNDP1Q96KN2 507 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 KCNK16Q96T55 309 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 EXOSC4Q9NPD3 245 aaKnown RBP12.62□□□□□ -0.39
UBR4-205ENST00000417040 CAPN6Q9Y6Q1 641 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 TNFAIP2Q03169 654 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 RERGLQ9H628 205 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 FAM49BQ9NUQ9 324 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 NFIBO00712 420 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 BBOX1O75936 387 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 KLHL2O95198 593 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 EYA4O95677 639 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 PYGLP06737 847 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 GEMIN4P57678 1058 aaKnown RBP12.62□□□□□ -0.39
UBR4-205ENST00000417040 MTDHQ86UE4 582 aaKnown RBP12.62□□□□□ -0.39
UBR4-205ENST00000417040 TPCN2Q8NHX9 752 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 SGF29Q96ES7 293 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 MRPL4Q9BYD3 311 aaKnown RBP12.62□□□□□ -0.39
UBR4-205ENST00000417040 ARAP3Q8WWN8 1544 aa12.62□□□□□ -0.39
UBR4-205ENST00000417040 ANKARQ7Z5J8 1434 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 M0R3G1 203 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 SLC16A3O15427 465 aaKnown RBP12.61□□□□□ -0.39
UBR4-205ENST00000417040 FKBP9O95302 570 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 HMOX2P30519 316 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 TRIM25Q14258 630 aaKnown RBP12.61□□□□□ -0.39
UBR4-205ENST00000417040 IYDQ6PHW0 289 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 FKBP9P1Q75LS8 142 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 GFM2Q969S9 779 aaKnown RBP12.61□□□□□ -0.39
UBR4-205ENST00000417040 CMTM5Q96DZ9 223 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 PRPF18Q99633 342 aaKnown RBP12.61□□□□□ -0.39
UBR4-205ENST00000417040 TMEM161AQ9NX61 479 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 FEM1BQ9UK73 627 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 SSU72P8A0A1W2PR75 194 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 TPI1P60174 286 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 SLC10A5Q5PT55 438 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 CCDC60Q8IWA6 550 aaPredicted RBP12.61□□□□□ -0.39
UBR4-205ENST00000417040 MIER2Q8N344 545 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 PTPRN2Q92932 1015 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 MAGEB5Q9BZ81 275 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 MEI4A8MW99 385 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 NBPF26B4DH59 902 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 UBOX5O94941 541 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 PHKA2P46019 1235 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 CEP78Q5JTW2 689 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 MEI1Q5TIA1 1274 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 TRIM72Q6ZMU5 477 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 NBPF15Q8N660 670 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 HNRNPLLQ8WVV9 542 aaKnown RBP12.61□□□□□ -0.39
UBR4-205ENST00000417040 TMEM237Q96Q45 408 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 EPAS1Q99814 870 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 TEX12Q9BXU0 123 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 TFE3P19532 575 aaPredicted RBP12.61□□□□□ -0.39
UBR4-205ENST00000417040 TSGA10IPQ3SY00 556 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 PPP1R18Q6NYC8 613 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 ANKS1AQ92625 1134 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 MKNK1Q9BUB5 465 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 METTL5Q9NRN9 209 aaKnown RBP12.61□□□□□ -0.39
UBR4-205ENST00000417040 TBC1D22BQ9NU19 505 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 GID8Q9NWU2 228 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 F5H6K3 240 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 HMBSP08397 361 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 KLRC3Q07444 240 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 PLA2G4FQ68DD2 849 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 ZC3H15Q8WU90 426 aaKnown RBP12.61□□□□□ -0.39
UBR4-205ENST00000417040 PLEKHA5Q9HAU0 1116 aa12.61□□□□□ -0.39
UBR4-205ENST00000417040 DDX20Q9UHI6 824 aaKnown RBP12.61□□□□□ -0.39
UBR4-205ENST00000417040 CEP170Q5SW79 1584 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 MAFGO15525 162 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 NBNO60934 754 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 PARNO95453 639 aaKnown RBP12.6□□□□□ -0.39
UBR4-205ENST00000417040 PDGFRBP09619 1106 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 ORC1Q13415 861 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 ITIH4Q14624 930 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 CRYMQ14894 314 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 WDR72Q3MJ13 1102 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 NLRP9Q7RTR0 991 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 BNIPLQ7Z465 357 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 FOXP4Q8IVH2 680 aaPredicted RBP12.6□□□□□ -0.39
UBR4-205ENST00000417040 ROPN1BQ9BZX4 212 aaPredicted RBP12.6□□□□□ -0.39
UBR4-205ENST00000417040 ROPN1Q9HAT0 212 aaPredicted RBP12.6□□□□□ -0.39
UBR4-205ENST00000417040 ITM2BQ9Y287 266 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 A0A1W2PQJ5 194 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 TFRCP02786 760 aaKnown RBP12.6□□□□□ -0.39
UBR4-205ENST00000417040 PDGFRAP16234 1089 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 PWP1Q13610 501 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 TRIM16LQ309B1 348 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 NDUFAF2Q8N183 169 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 RBBP8NLQ8NC74 664 aaPredicted RBP12.6□□□□□ -0.39
UBR4-205ENST00000417040 SPATA18Q8TC71 538 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 PIF1Q9H611 641 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 ARHGEF38Q9NXL2 777 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.6□□□□□ -0.39
UBR4-205ENST00000417040 SERPINB1P30740 379 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 IFNA8P32881 189 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 CCNA1P78396 465 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 GPSM2P81274 684 aa12.6□□□□□ -0.39
UBR4-205ENST00000417040 KCTD19Q17RG1 926 aaPredicted RBP12.6□□□□□ -0.39
UBR4-205ENST00000417040 KLHDC7AQ5VTJ3 777 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms