RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 PLEKHA4Q9H4M7 779 aa15.79■□□□□ 0.12
LIMS1-206ENST00000414829 CITO14578 2027 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 OR6C75A6NL08 312 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 KPNA7A9QM74 516 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 CLCN4P51793 760 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 GUCY2FP51841 1108 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 CLDN10P78369 228 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 VARS2Q5ST30 1063 aaKnown RBP15.78■□□□□ 0.12
LIMS1-206ENST00000414829 TAS1R1Q7RTX1 841 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 PARD3BQ8TEW8 1205 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 CEP63Q96MT8 703 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 SFXN1Q9H9B4 322 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 METTL14Q9HCE5 456 aaKnown RBP15.78■□□□□ 0.12
LIMS1-206ENST00000414829 CD207Q9UJ71 328 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 MAFFQ9ULX9 164 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 AGAP1Q9UPQ3 857 aa15.78■□□□□ 0.12
LIMS1-206ENST00000414829 BIN1O00499 593 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 PHACTR2O75167 634 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 TBX10O75333 385 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 AKAP3O75969 853 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 OAZ2O95190 189 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 GNA14O95837 355 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 CYP11A1P05108 521 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 ATICP31939 592 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 GTF2H1P32780 548 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 VAMP7P51809 220 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 ITIH3Q06033 890 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 BFSP1Q12934 665 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 SMAD4Q13485 552 aaKnown RBP15.77■□□□□ 0.12
LIMS1-206ENST00000414829 BIRC3Q13489 604 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 TRPC3Q13507 836 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 KCNC3Q14003 757 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 CTXN3Q4LDR2 81 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 CT47A1Q5JQC4 288 aaPredicted RBP15.77■□□□□ 0.12
LIMS1-206ENST00000414829 LIN9Q5TKA1 542 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 SLC8B1Q6J4K2 584 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 KLHL10Q6JEL2 608 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 CD300LGQ6UXG3 332 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 CYP26C1Q6V0L0 522 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 TRAPPC11Q7Z392 1133 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 ZC3H3Q8IXZ2 948 aaKnown RBP15.77■□□□□ 0.12
LIMS1-206ENST00000414829 TMEM86AQ8N2M4 240 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 LNX1Q8TBB1 728 aaPredicted RBP15.77■□□□□ 0.12
LIMS1-206ENST00000414829 NELFBQ8WX92 580 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 SENP8Q96LD8 212 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 IMPG2Q9BZV3 1241 aa15.77■□□□□ 0.12
LIMS1-206ENST00000414829 PLXNA4Q9HCM2 1894 aa15.77■□□□□ 0.11
LIMS1-206ENST00000414829 COL6A3P12111 3177 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 I3L4J1 428 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 HUS1O60921 280 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 STAU1O95793 577 aaKnown RBP15.76■□□□□ 0.11
LIMS1-206ENST00000414829 GLP2RO95838 553 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 P4HA1P13674 534 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 WNT7BP56706 349 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 SMARCB1Q12824 385 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 RAB33AQ14088 237 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 TPGS2Q68CL5 300 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 OVOS1Q6IE37 1185 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 CES5AQ6NT32 575 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 ANKRD54Q6NXT1 300 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 LLGL2Q6P1M3 1020 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 PRSS55Q6UWB4 352 aaPredicted RBP15.76■□□□□ 0.11
LIMS1-206ENST00000414829 DPH6Q7L8W6 267 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 THEM5Q8N1Q8 247 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 TOP6BLQ8N6T0 577 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 SMRP1Q8NCR6 262 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 CCDC150Q8NCX0 1101 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 OR5B17Q8NGF7 314 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 SLC22A17Q8WUG5 538 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 HPDLQ96IR7 371 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 B3GALT6Q96L58 329 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 ASB2Q96Q27 587 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 GDAP2Q9NXN4 497 aa15.76■□□□□ 0.11
LIMS1-206ENST00000414829 LRRIQ3A6PVS8 624 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-206ENST00000414829 CYB561D2O14569 222 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 GTF2F1P35269 517 aaKnown RBP eCLIP15.75■□□□□ 0.11
LIMS1-206ENST00000414829 CASP4P49662 377 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 MRPL58Q14197 206 aaKnown RBP15.75■□□□□ 0.11
LIMS1-206ENST00000414829 TJAP1Q5JTD0 557 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 CCDC183Q5T5S1 534 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 LMBRD2Q68DH5 695 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-206ENST00000414829 ANKRD40Q6AI12 368 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 ISM2Q6H9L7 571 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 CCDC149Q6ZUS6 474 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 CMASQ8NFW8 434 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-206ENST00000414829 TAF4BQ92750 862 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 MSLNLQ96KJ4 702 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 RIPOR3Q96MK2 946 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 NECTIN4Q96NY8 510 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 RHOBTB2Q9BYZ6 727 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 ZDHHC7Q9NXF8 308 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 ARMCX3Q9UH62 379 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-206ENST00000414829 SIX4Q9UIU6 781 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 RWDD2AQ9UIY3 292 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 BARX2Q9UMQ3 279 aaPredicted RBP15.75■□□□□ 0.11
LIMS1-206ENST00000414829 CTNND2Q9UQB3 1225 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 CDY1Q9Y6F8 540 aa15.75■□□□□ 0.11
LIMS1-206ENST00000414829 PTPRJQ12913 1337 aa15.74■□□□□ 0.11
LIMS1-206ENST00000414829 EYSQ5T1H1 3165 aa15.74■□□□□ 0.11
LIMS1-206ENST00000414829 PPP1R3GB7ZBB8 358 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms