RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 CABYRO75952 493 aa12.55□□□□□ -0.4
SKA3-203ENST00000400018 CSF2RAP15509 400 aa12.55□□□□□ -0.4
SKA3-203ENST00000400018 ACAT1P24752 427 aaKnown RBP12.55□□□□□ -0.4
SKA3-203ENST00000400018 BRD2P25440 801 aaKnown RBP12.55□□□□□ -0.4
SKA3-203ENST00000400018 SOX5P35711 763 aa12.55□□□□□ -0.4
SKA3-203ENST00000400018 GJA8P48165 433 aa12.55□□□□□ -0.4
SKA3-203ENST00000400018 NUP58Q9BVL2 599 aa12.55□□□□□ -0.4
SKA3-203ENST00000400018 KIAA1586Q9HCI6 787 aa12.55□□□□□ -0.4
SKA3-203ENST00000400018 TJP2Q9UDY2 1190 aa12.55□□□□□ -0.4
SKA3-203ENST00000400018 DNAJB4Q9UDY4 337 aa12.55□□□□□ -0.4
SKA3-203ENST00000400018 KCNG1Q9UIX4 513 aa12.55□□□□□ -0.4
SKA3-203ENST00000400018 DDX3XO00571 662 aaKnown RBP eCLIP12.54□□□□□ -0.43e-14■□□□□ 9.2
SKA3-203ENST00000400018 ARHGAP6O43182 974 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 TNNC2P02585 160 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 YARSP54577 528 aaKnown RBP12.54□□□□□ -0.4
SKA3-203ENST00000400018 SNRPFP62306 86 aaKnown RBP12.54□□□□□ -0.4
SKA3-203ENST00000400018 CLDN10P78369 228 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 DAB2IPQ5VWQ8 1189 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 HPDLQ96IR7 371 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 WDR24Q96S15 920 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 PSMB7Q99436 277 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 MRPL45Q9BRJ2 306 aaKnown RBP12.54□□□□□ -0.4
SKA3-203ENST00000400018 CRISPLD2Q9H0B8 497 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 DPEP3Q9H4B8 488 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 TMEM39AQ9NV64 488 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 ZNHIT6Q9NWK9 470 aaKnown RBP12.54□□□□□ -0.4
SKA3-203ENST00000400018 COQ4Q9Y3A0 265 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 ENC1O14682 589 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 ITGA4P13612 1032 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 LMO2P25791 158 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 BRCC3P46736 316 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 CETN1Q12798 172 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 MEA1Q16626 185 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 WDR44Q5JSH3 913 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 OTOP2Q7RTS6 562 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 RPUSD2Q8IZ73 545 aaKnown RBP12.54□□□□□ -0.4
SKA3-203ENST00000400018 CPA5Q8WXQ8 436 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 STK33Q9BYT3 514 aa12.54□□□□□ -0.4
SKA3-203ENST00000400018 GPR182O15218 404 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 ATP2C2O75185 946 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 ASS1P00966 412 aaKnown RBP12.53□□□□□ -0.4
SKA3-203ENST00000400018 ASPAP45381 313 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 CUL2Q13617 745 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 SYT10Q6XYQ8 523 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 TFAP2BQ92481 460 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 JAKMIP2Q96AA8 810 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 FAM49BQ9NUQ9 324 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 PRG3Q9Y2Y8 225 aaPredicted RBP12.53□□□□□ -0.4
SKA3-203ENST00000400018 A0A1W2PQJ5 194 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 GTPBP10A4D1E9 387 aaKnown RBP12.53□□□□□ -0.4
SKA3-203ENST00000400018 MAPK13O15264 365 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 SELPP16109 830 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 CHRNB2P17787 502 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 ACO1P21399 889 aaKnown RBP12.53□□□□□ -0.4
SKA3-203ENST00000400018 TRIM14Q14142 442 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 CLLU1OSQ5K130 101 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 ALKAL1Q6UXT8 129 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 STKLD1Q8NE28 680 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 BTBD6Q96KE9 485 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 CISHQ9NSE2 258 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 PACSIN2Q9UNF0 486 aaPredicted RBP12.53□□□□□ -0.4
SKA3-203ENST00000400018 DDHD2O94830 711 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 STAT1P42224 750 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 PSMC1P62191 440 aaKnown RBP12.53□□□□□ -0.4
SKA3-203ENST00000400018 LLGL1Q15334 1064 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 FIGNQ5HY92 759 aa12.53□□□□□ -0.4
SKA3-203ENST00000400018 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.52□□□□□ -0.41
SKA3-203ENST00000400018 COL6A1P12109 1028 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 CD19P15391 556 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 GTF2F1P35269 517 aaKnown RBP eCLIP12.52□□□□□ -0.41
SKA3-203ENST00000400018 ARHGAP25P42331 645 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 ASTE1Q2TB18 679 aaPredicted RBP12.52□□□□□ -0.41
SKA3-203ENST00000400018 DCAF4L1Q3SXM0 396 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 COL13A1Q5TAT6 717 aaPredicted RBP12.52□□□□□ -0.41
SKA3-203ENST00000400018 SPRED2Q7Z698 418 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 TMTC1Q8IUR5 882 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 EPS8L1Q8TE68 723 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 TMEM174Q8WUU8 243 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 ARMC5Q96C12 935 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 TMEM106CQ9BVX2 250 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 ZMYND8Q9ULU4 1186 aaPredicted RBP12.52□□□□□ -0.41
SKA3-203ENST00000400018 MYH10P35580 1976 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 DCDC2CA8MYV0 355 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 MOCS3O95396 460 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 GTF2H1P32780 548 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 DEFB103AP81534 67 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 DSC3Q14574 896 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 CCDC122Q5T0U0 273 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 C9orf57Q5W0N0 161 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 KIAA1328Q86T90 577 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 TMEM173Q86WV6 379 aaPredicted RBP12.52□□□□□ -0.41
SKA3-203ENST00000400018 ECHDC2Q86YB7 292 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 RBBP8NLQ8NC74 664 aaPredicted RBP12.52□□□□□ -0.41
SKA3-203ENST00000400018 SHC3Q92529 594 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 ARHGEF26Q96DR7 871 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 CYFIP2Q96F07 1278 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 TRIM7Q9C029 511 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 C11orf49Q9H6J7 331 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 OSGEPQ9NPF4 335 aa12.52□□□□□ -0.41
SKA3-203ENST00000400018 AIPL1Q9NZN9 384 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms