RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 EXTL3O43909 919 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 PDHXO00330 501 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 TRIM28Q13263 835 aaKnown RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 RRM2BQ7LG56 351 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 RFFLQ8WZ73 363 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 MAGOHP61326 146 aaKnown RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 CINPQ9BW66 212 aaPredicted RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 GPR182O15218 404 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 HLA-DRAP01903 254 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 PEX19P40855 299 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 RFX8Q6ZV50 586 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 TMCO5AQ8N6Q1 288 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 ARRDC4Q8NCT1 418 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 FBXO41Q8TF61 875 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 TGS1Q96RS0 853 aaKnown RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 DCTN3O75935 186 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 ALS2CLQ60I27 953 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 RNPC3Q96LT9 517 aaKnown RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 ARHGEF38Q9NXL2 777 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 EHD2Q9NZN4 543 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 FAM200BP0CF97 657 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 EPB42P16452 691 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 PTRHD1Q6GMV3 140 aaKnown RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 FBXO33Q7Z6M2 555 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 CARNMT1Q8N4J0 409 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 GPRC5CQ9NQ84 441 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 ZFP69BQ9UJL9 534 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 RIMBP3CA6NJZ7 1639 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 RIMBP3BA6NNM3 1639 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 RIMBP3Q9UFD9 1639 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 GYG2O15488 501 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 CKMP06732 381 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 GYS2P54840 703 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 PDXDC1Q6P996 788 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 COLEC11Q9BWP8 271 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 EML4Q9HC35 981 aaKnown RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 SELENONQ9NZV5 590 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 P3H1Q32P28 736 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 RGS9BPQ6ZS82 235 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 GLIS2Q9BZE0 524 aaPredicted RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 H0Y3Z8 333 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 SLC16A3O15427 465 aaKnown RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 MEFVO15553 781 aaPredicted RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 IGFBP4P22692 258 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 RABL6Q3YEC7 729 aaPredicted RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 MDH1BQ5I0G3 518 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 URODP06132 367 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 MBL2P11226 248 aaPredicted RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 SLC8A1P32418 973 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 SGO1Q5FBB7 561 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 GPAT2Q6NUI2 795 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 ZFYVE19Q96K21 471 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 MAGEB10Q96LZ2 347 aaPredicted RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 PRMT7Q9NVM4 692 aaPredicted RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 CASTOR2A6NHX0 329 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 SUPT3HB4E1H0 165 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 SUPT3HO75486 399 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 RALBP11234 206 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 VEGFAP15692 232 aaPredicted RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 VCAM1P19320 739 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 PBLDP30039 288 aaPredicted RBP11.92□□□□□ -0.5
TTC28-201ENST00000397906 BLVRAP53004 296 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 CATSPER3Q86XQ3 398 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 DNAJC7Q99615 494 aa11.92□□□□□ -0.5
TTC28-201ENST00000397906 PPRC1Q5VV67 1664 aaKnown RBP11.91□□□□□ -0.5
TTC28-201ENST00000397906 NPM3O75607 178 aaKnown RBP11.91□□□□□ -0.5
TTC28-201ENST00000397906 RAG1P15918 1043 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 NFIAQ12857 509 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 RAP1GAPP47736 663 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 TGFB2P61812 414 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 CAV1Q03135 178 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 MS4A14Q96JA4 679 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 RAB6BQ9NRW1 208 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 TRIM17Q9Y577 477 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 LY6KQ17RY6 165 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 HMGB1P1B2RPK0 211 aaPredicted RBP11.91□□□□□ -0.5
TTC28-201ENST00000397906 SETSIPP0DME0 302 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 ZC3H12BQ5HYM0 836 aaKnown RBP11.91□□□□□ -0.5
TTC28-201ENST00000397906 MYMKA6NI61 221 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 TADA3O75528 432 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 C11orf74Q86VG3 221 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 METTL16Q86W50 562 aaKnown RBP11.91□□□□□ -0.5
TTC28-201ENST00000397906 CALR3Q96L12 384 aaKnown RBP11.91□□□□□ -0.5
TTC28-201ENST00000397906 CCDC90BQ9GZT6 254 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 KIAA0391O15091 583 aaKnown RBP11.91□□□□□ -0.5
TTC28-201ENST00000397906 LRRC8EQ6NSJ5 796 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 CATSPERBQ9H7T0 1116 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 CSF1RP07333 972 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 HLA-DPA1P20036 260 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 XPO7Q9UIA9 1087 aaKnown RBP11.91□□□□□ -0.5
TTC28-201ENST00000397906 BCORL1Q5H9F3 1711 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 RUBCNLQ9H714 662 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 TMEM39AQ9NV64 488 aa11.91□□□□□ -0.5
TTC28-201ENST00000397906 SYCE1LA8MT33 242 aa11.9□□□□□ -0.5
TTC28-201ENST00000397906 MTMR12Q9C0I1 747 aa11.9□□□□□ -0.5
TTC28-201ENST00000397906 SLC37A4O43826 429 aa11.9□□□□□ -0.5
TTC28-201ENST00000397906 ERFP50548 548 aa11.9□□□□□ -0.5
TTC28-201ENST00000397906 BFSP2Q13515 415 aa11.9□□□□□ -0.5
TTC28-201ENST00000397906 C20orf96Q9NUD7 363 aaPredicted RBP11.9□□□□□ -0.5
TTC28-201ENST00000397906 C6orf203Q9P0P8 240 aaPredicted RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms