RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 RERGLQ9H628 205 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 METTL5Q9NRN9 209 aaKnown RBP12.4□□□□□ -0.42
SYNPO-202ENST00000394243 ATAD3AQ9NVI7 634 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 AK9Q5TCS8 1911 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 DENND3A2RUS2 1198 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 O00370 1275 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 EIF2AK2P19525 551 aaKnown RBP12.4□□□□□ -0.42
SYNPO-202ENST00000394243 TNFAIP1Q13829 316 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 ABI1Q8IZP0 508 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 FAM210AQ96ND0 272 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 STK33Q9BYT3 514 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 FOXP3Q9BZS1 431 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 PDZK1P1A8MUH7 402 aa12.4□□□□□ -0.43
SYNPO-202ENST00000394243 STAT3P40763 770 aa12.4□□□□□ -0.43
SYNPO-202ENST00000394243 DPYDQ12882 1025 aa12.4□□□□□ -0.43
SYNPO-202ENST00000394243 MROH9Q5TGP6 573 aa12.4□□□□□ -0.43
SYNPO-202ENST00000394243 ENOSF1Q7L5Y1 443 aa12.4□□□□□ -0.43
SYNPO-202ENST00000394243 ZKSCAN4Q969J2 545 aaPredicted RBP12.4□□□□□ -0.43
SYNPO-202ENST00000394243 REXO4Q9GZR2 422 aaKnown RBP12.4□□□□□ -0.43
SYNPO-202ENST00000394243 ARHGAP31Q2M1Z3 1444 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 ARIH2O95376 493 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 GPC3P51654 580 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 TP53BP2Q13625 1128 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 SGSM1Q2NKQ1 1148 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 EFHC2Q5JST6 749 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 CENPPQ6IPU0 288 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 WDR60Q8WVS4 1066 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 LRRC39Q96DD0 335 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 LRCH1Q9Y2L9 728 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 C5orf58C9J3I9 102 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 PRPF4O43172 522 aaKnown RBP eCLIP12.39□□□□□ -0.43
SYNPO-202ENST00000394243 FAM58BPP0C7Q3 252 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 TFE3P19532 575 aaPredicted RBP12.39□□□□□ -0.43
SYNPO-202ENST00000394243 KCNK10P57789 538 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 FUT11Q495W5 492 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 EEPD1Q7L9B9 569 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 PLEKHA8Q96JA3 519 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 SEC31BQ9NQW1 1179 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 ADGRL2O95490 1459 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 PTCH1Q13635 1447 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 PTPN4P29074 926 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 KIZQ2M2Z5 673 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 TRIM71Q2Q1W2 868 aaKnown RBP12.39□□□□□ -0.43
SYNPO-202ENST00000394243 SNX30Q5VWJ9 437 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 TRIM54Q9BYV2 358 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 GPBP1L1Q9HC44 474 aaPredicted RBP12.39□□□□□ -0.43
SYNPO-202ENST00000394243 MRGBPQ9NV56 204 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 PLEKHG1Q9ULL1 1385 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 DFFAO00273 331 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 GHRP10912 638 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 COMTP21964 271 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 IL12RB1P42701 662 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 SCFD1Q8WVM8 642 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 KLHL31Q9H511 634 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 IMPAD1Q9NX62 359 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 UVRAGQ9P2Y5 699 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 ADGRA2Q96PE1 1338 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 COILP38432 576 aaPredicted RBP12.39□□□□□ -0.43
SYNPO-202ENST00000394243 FAM180AQ6UWF9 173 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 BBS7Q8IWZ6 715 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 MB21D2Q8IYB1 491 aaPredicted RBP12.39□□□□□ -0.43
SYNPO-202ENST00000394243 ANKS1AQ92625 1134 aa12.39□□□□□ -0.43
SYNPO-202ENST00000394243 NPHP3-ACAD11A0A0J9YXS1 232 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 AHCYL1O43865 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 FKBP6O75344 327 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 UCHL3P15374 230 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 CSTF3Q12996 717 aaKnown RBP12.38□□□□□ -0.43
SYNPO-202ENST00000394243 SP110Q9HB58 689 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 GRIN2AQ12879 1464 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 KLRC1P26715 233 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 ADSSL1Q8N142 457 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 ZCCHC7Q8N3Z6 543 aaKnown RBP12.38□□□□□ -0.43
SYNPO-202ENST00000394243 SMAD5Q99717 465 aaKnown RBP12.38□□□□□ -0.43
SYNPO-202ENST00000394243 PRAMEF22A3QJZ6 481 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L5A8MUK1 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 TPD52L2O43399 206 aaKnown RBP12.38□□□□□ -0.43
SYNPO-202ENST00000394243 COG2Q14746 738 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 SLC9A5Q14940 896 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 TSHZ1Q6ZSZ6 1077 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 C19orf18Q8NEA5 215 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 PPP2R3CQ969Q6 453 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 STAP1Q9ULZ2 295 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 KRT87PA6NCN2 255 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L15C9J2P7 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L13C9JLJ4 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L11C9JVI0 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L18D6R9N7 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L22D6RA61 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L17D6RBQ6 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L19D6RCP7 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L20D6RJB6 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 TCF3P15923 654 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 MCAMP43121 646 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP11P51784 963 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L24Q0WX57 530 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 AP3B2Q13367 1082 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 RASA2Q15283 850 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 USP17L6PQ6QN14 398 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 FGD2Q7Z6J4 655 aa12.38□□□□□ -0.43
SYNPO-202ENST00000394243 DGKHQ86XP1 1220 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms