RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MYBL1P10243 752 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 PECAM1P16284 738 aaPredicted RBP17.35■□□□□ 0.37
SDC4-201ENST00000372733 EPHB2P29323 1055 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 GCKP35557 465 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 HSD17B4P51659 736 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 CCNG1P51959 295 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 PTP4A2Q12974 167 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 ATP13A4Q4VNC1 1196 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 AGGF1Q8N302 714 aaeCLIP17.35■□□□□ 0.37
SDC4-201ENST00000372733 VPS37BQ9H9H4 285 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 DNPEPQ9ULA0 475 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 COL11A2P13942 1736 aaPredicted RBP17.35■□□□□ 0.37
SDC4-201ENST00000372733 EDF1O60869 148 aaKnown RBP17.35■□□□□ 0.37
SDC4-201ENST00000372733 T-ENOLP0DO92 83 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 FGFR1P11362 822 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 TCF4P15884 667 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 GNAZP19086 355 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 CA4P22748 312 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 MRPS9P82933 396 aaKnown RBP17.35■□□□□ 0.37
SDC4-201ENST00000372733 BLMHQ13867 455 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 SPOPLQ6IQ16 392 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 KATNAL2Q8IYT4 538 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 LRRC8CQ8TDW0 803 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 C10orf82Q8WW14 230 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 SLC7A6OSQ96CW6 309 aaPredicted RBP17.35■□□□□ 0.37
SDC4-201ENST00000372733 TRIM11Q96F44 468 aa17.35■□□□□ 0.37
SDC4-201ENST00000372733 MOV10L1Q9BXT6 1211 aaKnown RBP17.35■□□□□ 0.37
SDC4-201ENST00000372733 PRPF4O43172 522 aaKnown RBP eCLIP17.34■□□□□ 0.374e-7■■■■□ 22.6
SDC4-201ENST00000372733 LYPLA2O95372 231 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 RAD23BP54727 409 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 MCCD1P59942 119 aaPredicted RBP17.34■□□□□ 0.37
SDC4-201ENST00000372733 DMP1Q13316 513 aaPredicted RBP17.34■□□□□ 0.37
SDC4-201ENST00000372733 MTMR1Q13613 665 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 PDK4Q16654 411 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 LONP2Q86WA8 852 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 NAF1Q96HR8 494 aaKnown RBP17.34■□□□□ 0.37
SDC4-201ENST00000372733 SMC6Q96SB8 1091 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 FAM213AQ9BRX8 229 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 TBC1D10AQ9BXI6 508 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 KMT5AQ9NQR1 393 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 PCDHB2Q9Y5E7 798 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 CLRN2A0PK11 232 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 H0Y3Z8 333 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 DNALI1O14645 258 aaPredicted RBP17.34■□□□□ 0.37
SDC4-201ENST00000372733 BANF1O75531 89 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 ALDH1B1P30837 517 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 ZFYVE27Q5T4F4 411 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 CC2D2BQ6DHV5 1058 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.34■□□□□ 0.37
SDC4-201ENST00000372733 ZNF622Q969S3 477 aaKnown RBP eCLIP17.34■□□□□ 0.37
SDC4-201ENST00000372733 FBXL18Q96ME1 805 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 CYP39A1Q9NYL5 469 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 A0A1W2PPM1 405 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 LIASO43766 372 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 ATP5HO75947 161 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 UPP2O95045 317 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 CYP1A1P04798 512 aaPredicted RBP17.34■□□□□ 0.37
SDC4-201ENST00000372733 ATF7P17544 494 aaPredicted RBP17.34■□□□□ 0.37
SDC4-201ENST00000372733 CALB2P22676 271 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 PEX19P40855 299 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 ARSEP51690 589 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 GPS1Q13098 491 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 NR1H3Q13133 447 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 MAMLD1Q13495 774 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 CDCA2Q69YH5 1023 aaPredicted RBP17.34■□□□□ 0.37
SDC4-201ENST00000372733 TTC8Q8TAM2 541 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 ZNF516Q92618 1163 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 HAUS1Q96CS2 278 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 UBN1Q9NPG3 1134 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 HERC5Q9UII4 1024 aaKnown RBP17.34■□□□□ 0.37
SDC4-201ENST00000372733 UBIAD1Q9Y5Z9 338 aa17.34■□□□□ 0.37
SDC4-201ENST00000372733 HNRNPDLO14979 420 aaKnown RBP17.33■□□□□ 0.36
SDC4-201ENST00000372733 DCTN3O75935 186 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 TPBGLP0DKB5 382 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 EIF2AK2P19525 551 aaKnown RBP17.33■□□□□ 0.36
SDC4-201ENST00000372733 GTF2H1P32780 548 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 NFX1Q12986 1120 aaKnown RBP17.33■□□□□ 0.36
SDC4-201ENST00000372733 RGS9BPQ6ZS82 235 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 ENOSF1Q7L5Y1 443 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 CDAN1Q8IWY9 1227 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 EXD1Q8NHP7 514 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 STK32AQ8WU08 396 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 INPP5DQ92835 1189 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 NUDCD1Q96RS6 583 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 OSBPL1AQ9BXW6 950 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 HOMER2Q9NSB8 354 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 ZNF148Q9UQR1 794 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 ATP9AO75110 1047 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 LUC7L3O95232 432 aaKnown RBP17.33■□□□□ 0.36
SDC4-201ENST00000372733 CCNE2O96020 404 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 ALDH3A1P30838 453 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 WNT7BP56706 349 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 FKBP1AP62942 108 aaKnown RBP17.33■□□□□ 0.36
SDC4-201ENST00000372733 LIN9Q5TKA1 542 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 OTOAQ7RTW8 1153 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 TDRPQ86YL5 185 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 C4orf19Q8IY42 314 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 ZBED8Q8IZ13 594 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 OGFOD1Q8N543 542 aa17.33■□□□□ 0.36
SDC4-201ENST00000372733 TIPINQ9BVW5 301 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms