RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 KLF1Q13351 362 aaPredicted RBP23.16■■□□□ 1.3
SHMT1-202ENST00000352886 ZPBP2Q6X784 338 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 SYDE1Q6ZW31 735 aaPredicted RBP23.16■■□□□ 1.3
SHMT1-202ENST00000352886 TRMT10CQ7L0Y3 403 aaKnown RBP23.16■■□□□ 1.3
SHMT1-202ENST00000352886 PACS2Q86VP3 889 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 BRSK2Q8IWQ3 736 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 ZNF606Q8WXB4 792 aa23.16■■□□□ 1.3
SHMT1-202ENST00000352886 RASGRF2O14827 1237 aa23.15■■□□□ 1.3
SHMT1-202ENST00000352886 IVDP26440 423 aa23.15■■□□□ 1.3
SHMT1-202ENST00000352886 C1QBPQ07021 282 aaKnown RBP23.15■■□□□ 1.3
SHMT1-202ENST00000352886 LY6KQ17RY6 165 aa23.15■■□□□ 1.3
SHMT1-202ENST00000352886 TTC31Q49AM3 519 aaPredicted RBP23.15■■□□□ 1.3
SHMT1-202ENST00000352886 RHBDF2Q6PJF5 856 aa23.15■■□□□ 1.3
SHMT1-202ENST00000352886 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.15■■□□□ 1.3
SHMT1-202ENST00000352886 SEPT1Q8WYJ6 367 aa23.15■■□□□ 1.3
SHMT1-202ENST00000352886 XPO6Q96QU8 1125 aaKnown RBP23.15■■□□□ 1.3
SHMT1-202ENST00000352886 DDX23Q9BUQ8 820 aaKnown RBP23.15■■□□□ 1.3
SHMT1-202ENST00000352886 SPATC1LQ9H0A9 340 aa23.15■■□□□ 1.3
SHMT1-202ENST00000352886 DDX20Q9UHI6 824 aaKnown RBP23.15■■□□□ 1.3
SHMT1-202ENST00000352886 CPP00450 1065 aa23.14■■□□□ 1.3
SHMT1-202ENST00000352886 CHKAP35790 457 aa23.14■■□□□ 1.3
SHMT1-202ENST00000352886 IFT88Q13099 833 aa23.14■■□□□ 1.3
SHMT1-202ENST00000352886 ERMARDQ5T6L9 678 aa23.14■■□□□ 1.3
SHMT1-202ENST00000352886 YTHDF3Q7Z739 585 aaKnown RBP23.14■■□□□ 1.3
SHMT1-202ENST00000352886 ATL2Q8NHH9 583 aa23.14■■□□□ 1.3
SHMT1-202ENST00000352886 FAM118BQ9BPY3 351 aa23.14■■□□□ 1.3
SHMT1-202ENST00000352886 MTMR12Q9C0I1 747 aa23.14■■□□□ 1.3
SHMT1-202ENST00000352886 ADAM7Q9H2U9 754 aa23.14■■□□□ 1.3
SHMT1-202ENST00000352886 GGA2Q9UJY4 613 aa23.14■■□□□ 1.3
SHMT1-202ENST00000352886 CD2APQ9Y5K6 639 aa23.14■■□□□ 1.3
SHMT1-202ENST00000352886 FAM189A1O60320 539 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 MSCO60682 206 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 ASS1P00966 412 aaKnown RBP23.14■■□□□ 1.29
SHMT1-202ENST00000352886 CD58P19256 250 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 MARK3P27448 753 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 NF2P35240 595 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 ITGA8P53708 1063 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 ZNF568Q3ZCX4 644 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 METTL7BQ6UX53 244 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 WDR49Q8IV35 697 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 KATNAL2Q8IYT4 538 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 CENPTQ96BT3 561 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 FAM212AQ96EL1 285 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 MRPL4Q9BYD3 311 aaKnown RBP23.14■■□□□ 1.29
SHMT1-202ENST00000352886 PARVAQ9NVD7 372 aa23.14■■□□□ 1.29
SHMT1-202ENST00000352886 TOM1L1O75674 476 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 ACSL3O95573 720 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 ZNF132P52740 706 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 FEZF2Q8TBJ5 459 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 OSBPL8Q9BZF1 889 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 LRRC37A2A6NM11 1700 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 SRGAP2CP0DJJ0 459 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 ATF2P15336 505 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 VPS41P49754 854 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 EFNA5P52803 228 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 RPL7AP62424 266 aaKnown RBP23.13■■□□□ 1.29
SHMT1-202ENST00000352886 AUHQ13825 339 aaKnown RBP23.13■■□□□ 1.29
SHMT1-202ENST00000352886 PPP1R2P3Q6NXS1 205 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 GADL1Q6ZQY3 521 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 SCLT1Q96NL6 688 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 HOMER3Q9NSC5 361 aa23.13■■□□□ 1.29
SHMT1-202ENST00000352886 C5orf60A6NFR6 353 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 TGFB3P10600 412 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 ADCY8P40145 1251 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 AP3M2P53677 418 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 RNF187Q5TA31 235 aaPredicted RBP23.12■■□□□ 1.29
SHMT1-202ENST00000352886 C6orf89Q6UWU4 347 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 ANKS1BQ7Z6G8 1248 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 UBR7Q8N806 425 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 CCDC113Q9H0I3 377 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 STMN4Q9H169 189 aaPredicted RBP23.12■■□□□ 1.29
SHMT1-202ENST00000352886 DNAJC17Q9NVM6 304 aaKnown RBP23.12■■□□□ 1.29
SHMT1-202ENST00000352886 MMP8P22894 467 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 MYL6P60660 151 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 CCNG2Q16589 344 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 CPLX4Q7Z7G2 160 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 TRIM50Q86XT4 487 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 GPC2Q8N158 579 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 EXD1Q8NHP7 514 aa23.12■■□□□ 1.29
SHMT1-202ENST00000352886 LAMTOR4Q0VGL1 99 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 LONRF1Q17RB8 773 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 ZNF394Q53GI3 561 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 TNFAIP8L3Q5GJ75 292 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 IER5Q5VY09 327 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 ARMC9Q7Z3E5 817 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 LRRC71Q8N4P6 559 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 RNF149Q8NC42 400 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 CHMP6Q96FZ7 201 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 FAM167AQ96KS9 214 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 ACO2Q99798 780 aaKnown RBP23.11■■□□□ 1.29
SHMT1-202ENST00000352886 TRAIPQ9BWF2 469 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 ROPN1BQ9BZX4 212 aaPredicted RBP23.11■■□□□ 1.29
SHMT1-202ENST00000352886 R3HDMLQ9H3Y0 253 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 ROPN1Q9HAT0 212 aaPredicted RBP23.11■■□□□ 1.29
SHMT1-202ENST00000352886 KLHL11Q9NVR0 708 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 IP6K2Q9UHH9 426 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 OTOFQ9HC10 1997 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 MFSD5Q6N075 450 aa23.11■■□□□ 1.29
SHMT1-202ENST00000352886 ATXN2LQ8WWM7 1075 aaKnown RBP23.11■■□□□ 1.29
SHMT1-202ENST00000352886 SEC16BQ96JE7 1060 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms