RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 SNX3O60493 162 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 PCNX4Q63HM2 1172 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 DUPD1Q68J44 220 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 APOBEC3HQ6NTF7 200 aaKnown RBP13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 GPAT2Q6NUI2 795 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 NLRP9Q7RTR0 991 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 ZSWIM2Q8NEG5 633 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 CDKL2Q92772 493 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 XPO7Q9UIA9 1087 aaKnown RBP13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 CNTNAP4Q9C0A0 1308 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 BCAR1P56945 870 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 MKRN3Q13064 507 aaKnown RBP13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 CNGA2Q16280 664 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 PKN2Q16513 984 aaKnown RBP13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 ZNF568Q3ZCX4 644 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 TAF1BQ53T94 588 aaPredicted RBP13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 CCDC125Q86Z20 511 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 RNF169Q8NCN4 708 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 FLAD1Q8NFF5 587 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 EPS8L1Q8TE68 723 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 CALB1P05937 261 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 NR3C2P08235 984 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 ZCCHC18P0CG32 403 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 TNFRSF8P28908 595 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 EPHB2P29323 1055 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 SLC1A1P43005 524 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 RARRES1P49788 294 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 HMGCS2P54868 508 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 SESN2P58004 480 aaPredicted RBP13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 ITIH4Q14624 930 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 Q3C1V9 767 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 ZCWPW2Q504Y3 356 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 RABGAP1LQ5R372 815 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 SH2D4BQ5SQS7 431 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 STRIP1Q5VSL9 837 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 C1orf186Q6ZWK4 172 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 ARID3BQ8IVW6 561 aaPredicted RBP13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 RNF149Q8NC42 400 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 DNAJC9Q8WXX5 260 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 PGM2Q96G03 612 aa13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 PSMC3IPQ9P2W1 217 aaPredicted RBP13.1□□□□□ -0.31
SNRNP48-201ENST00000342415 GTPBP10A4D1E9 387 aaKnown RBP13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 NDC80O14777 642 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 IL1R1P14778 569 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 RCN1Q15293 331 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 MAPK6Q16659 721 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 ASTE1Q2TB18 679 aaPredicted RBP13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 KLHL38Q2WGJ6 581 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 SLFN12LQ6IEE8 588 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 C11orf63Q6NUN7 778 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 ISLR2Q6UXK2 745 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 WDR75Q8IWA0 830 aaKnown RBP13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 SPATA18Q8TC71 538 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 NINJ2Q9NZG7 142 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 COG5Q9UP83 839 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 RGPD2P0DJD1 1756 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 ANKRD63C9JTQ0 380 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 KCNN4O15554 427 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 BANF1O75531 89 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 ASPHQ12797 758 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 WDR18Q9BV38 432 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 RPAP3Q9H6T3 665 aaPredicted RBP13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 MRC1P22897 1456 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 CTCFP49711 727 aaPredicted RBP13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 KLC1Q07866 573 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 PTK7Q13308 1070 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 Q4G0T1 1027 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 MROH9Q5TGP6 573 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 KCNV1Q6PIU1 500 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 FEZF2Q8TBJ5 459 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 NSUN6Q8TEA1 469 aaKnown RBP13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 PPWD1Q96BP3 646 aaKnown RBP13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 DDX27Q96GQ7 796 aaKnown RBP13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 RIT2Q99578 217 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 PCMTD2Q9NV79 361 aa13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 HERC5Q9UII4 1024 aaKnown RBP13.09□□□□□ -0.31
SNRNP48-201ENST00000342415 ASAP2O43150 1006 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 CSDE1O75534 798 aaKnown RBP13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 LCA5LO95447 670 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 GZMAP12544 262 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 THOC5Q13769 683 aaKnown RBP13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 TKFCQ3LXA3 575 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 LRRC71Q8N4P6 559 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 TTLL6Q8N841 843 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 WRNIP1Q96S55 665 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 RPF1Q9H9Y2 349 aaKnown RBP13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 JPH1Q9HDC5 661 aaPredicted RBP13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 SUGT1Q9Y2Z0 365 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 RBAK-RBAKDNI3L0D1 243 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 NVLO15381 856 aaKnown RBP13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 PECAM1P16284 738 aaPredicted RBP13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 CIITAP33076 1130 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 SLC12A2P55011 1212 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 PRKCEQ02156 737 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 RRP1BQ14684 758 aaKnown RBP13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 LRRC57Q8N9N7 239 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 ZNF302Q9NR11 478 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 ARMCX1Q9P291 453 aa13.08□□□□□ -0.32
SNRNP48-201ENST00000342415 DNPEPQ9ULA0 475 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms