RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 GOLGA8SH3BPF8 625 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 PODXLO00592 558 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 LDHAP00338 332 aaKnown RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 ADCY8P40145 1251 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 MAPK6Q16659 721 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 NLRP14Q86W24 1093 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 EPN3Q9H201 632 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 ZNF408Q9H9D4 720 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 POLIQ9UNA4 740 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 STYXL1Q9Y6J8 313 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 TULP2O00295 520 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 CNMDO75829 334 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 CYP1A1P04798 512 aaPredicted RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 POTEJP0CG39 1038 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 CYP2C8P10632 490 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 CDH8P55286 799 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 CENPCQ03188 943 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 ADCY2Q08462 1091 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 TARBP2Q15633 366 aaKnown RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 LONRF1Q17RB8 773 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 RNF187Q5TA31 235 aaPredicted RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 ZNF473Q8WTR7 871 aaKnown RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 MCEEQ96PE7 176 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 PLVAPQ9BX97 442 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 MRPL4Q9BYD3 311 aaKnown RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 FHDC1Q9C0D6 1143 aaPredicted RBP11□□□□□ -0.65
LIMA1-201ENST00000341247 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11□□□□□ -0.65
LIMA1-201ENST00000341247 MGAMO43451 1857 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 A0A0G2JMZ2 1700 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 LRRC37A2A6NM11 1700 aa11□□□□□ -0.65
LIMA1-201ENST00000341247 MSCO60682 206 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 ATP2C2O75185 946 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 MAFO75444 373 aaPredicted RBP10.99□□□□□ -0.65
LIMA1-201ENST00000341247 TMEM191BP0C7N4 346 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 KCTD2Q14681 263 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 ZNF568Q3ZCX4 644 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 DCUN1D2Q6PH85 259 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 GSTA5Q7RTV2 222 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 MYCBPAPQ8TBZ2 947 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 MORC4Q8TE76 937 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 DDX27Q96GQ7 796 aaKnown RBP10.99□□□□□ -0.65
LIMA1-201ENST00000341247 TXLNGYQ9BZA5 131 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 MINDY3Q9H8M7 445 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 EFCC1Q9HA90 598 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 TJP2Q9UDY2 1190 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 ADGRA2Q96PE1 1338 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 IGKV6D-21A0A0A0MT36 114 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 F8VP50 259 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 RGS16O15492 202 aaPredicted RBP10.99□□□□□ -0.65
LIMA1-201ENST00000341247 PROSCO94903 275 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 TXNP10599 105 aaKnown RBP10.99□□□□□ -0.65
LIMA1-201ENST00000341247 RFC5P40937 340 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 TCEAL1Q15170 157 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 TXNRD3NBQ6F5E7 133 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 GPAT2Q6NUI2 795 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 MICALL1Q8N3F8 863 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 ARFGAP2Q8N6H7 521 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 MGARPQ8TDB4 240 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 GPR20Q99678 358 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 RASSF4Q9H2L5 321 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 MLXIPLQ9NP71 852 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 CISHQ9NSE2 258 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 GINS2Q9Y248 185 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 PIK3R2O00459 728 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 FSCN2O14926 492 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 TOM1L1O75674 476 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 CXCL8P10145 99 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 IREB2P48200 963 aaKnown RBP10.99□□□□□ -0.65
LIMA1-201ENST00000341247 IFNAR2P48551 515 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 ITGA8P53708 1063 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 CLDN10P78369 228 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 CAPN12Q6ZSI9 719 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 BRSK2Q8IWQ3 736 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 ZBTB8OSQ8IWT0 167 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 TFAP2BQ92481 460 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 SCLT1Q96NL6 688 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 MMP19Q99542 508 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 ACO2Q99798 780 aaKnown RBP10.99□□□□□ -0.65
LIMA1-201ENST00000341247 RBPJLQ9UBG7 517 aa10.99□□□□□ -0.65
LIMA1-201ENST00000341247 SOCS7O14512 581 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 MTM1Q13496 603 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 MOGSQ13724 837 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 QPCTQ16769 361 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 EAPPQ56P03 285 aaPredicted RBP10.98□□□□□ -0.65
LIMA1-201ENST00000341247 EFCAB12Q6NXP0 572 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.98□□□□□ -0.65
LIMA1-201ENST00000341247 RAPGEF5Q92565 580 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 RNPEPQ9H4A4 650 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 C10orf88Q9H8K7 445 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.98□□□□□ -0.65
LIMA1-201ENST00000341247 CTNNAL1Q9UBT7 734 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 DYNLT1P63172 113 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 IFT88Q13099 833 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 PLCB4Q15147 1175 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 CLUL1Q15846 466 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 KYNUQ16719 465 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 SMTNL2Q2TAL5 461 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 ZNF699Q32M78 642 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 HOOK3Q86VS8 718 aa10.98□□□□□ -0.65
LIMA1-201ENST00000341247 EFCAB13Q8IY85 973 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms