RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 TECP42680 631 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 TSFMP43897 325 aaKnown RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 KCNJ4P48050 445 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 DRP2Q13474 957 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 DMC1Q14565 340 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 STXBP2Q15833 593 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 PRRT3Q5FWE3 981 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 ZMYM1Q5SVZ6 1142 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 TCTN3Q6NUS6 607 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 GLB1LQ6UWU2 654 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 ABHD15Q6UXT9 468 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 LPCAT2Q7L5N7 544 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 TGIF2LYQ8IUE0 185 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 SCUBE1Q8IWY4 988 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 DHX40Q8IX18 779 aaKnown RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 KLHL23Q8NBE8 558 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 WFIKKN2Q8TEU8 576 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 AMNQ9BXJ7 453 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 RIOX1Q9H6W3 641 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 POLR1BQ9H9Y6 1135 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 SLTMQ9NWH9 1034 aaKnown RBP eCLIP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 MTMR4Q9NYA4 1195 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 ERAP1Q9NZ08 941 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 FBXO9Q9UK97 447 aaPredicted RBP1.8□□□□□ -2.12
LINC00643-201ENST00000334389 PCDHA12Q9UN75 941 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 PCDHB5Q9Y5E4 795 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 IKBKGQ9Y6K9 419 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 BIRC6Q9NR09 4857 aa1.8□□□□□ -2.12
LINC00643-201ENST00000334389 ADAMTS3O15072 1205 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 CDC45O75419 566 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 OAZ2O95190 189 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 CAVIN2O95810 425 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 LDLRP01130 860 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 ITGA2BP08514 1039 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 STSP08842 583 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 FTH1P19P0C7X4 201 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 HSPD1P10809 573 aaKnown RBP1.79□□□□□ -2.12
LINC00643-201ENST00000334389 VDRP11473 427 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 BRD2P25440 801 aaKnown RBP1.79□□□□□ -2.12
LINC00643-201ENST00000334389 SFNP31947 248 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 GLUD2P49448 558 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 NEK3P51956 506 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 PMS2P54278 862 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 OCRLQ01968 901 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 CNTN2Q02246 1040 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 KRTAP1-1Q07627 177 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 NFIAQ12857 509 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 DAZAP2Q15038 168 aaPredicted RBP1.79□□□□□ -2.12
LINC00643-201ENST00000334389 GRIK4Q16099 956 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 ATP2B3Q16720 1220 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 ZNF630Q2M218 657 aaPredicted RBP1.79□□□□□ -2.12
LINC00643-201ENST00000334389 SMTNL2Q2TAL5 461 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 KLHL40Q2TBA0 621 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 USP39Q53GS9 565 aaKnown RBP1.79□□□□□ -2.12
LINC00643-201ENST00000334389 C6orf132Q5T0Z8 1188 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 C6orf118Q5T5N4 469 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 TMCO4Q5TGY1 634 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 CCDC102BQ68D86 513 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 SNRNP48Q6IEG0 339 aaKnown RBP1.79□□□□□ -2.12
LINC00643-201ENST00000334389 KCNT2Q6UVM3 1135 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 ALKAL1Q6UXT8 129 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 ADGRD2Q7Z7M1 963 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 PARP9Q8IXQ6 854 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 CCDC144CPQ8IYA2 1237 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 KIAA2013Q8IYS2 634 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 STAG2Q8N3U4 1231 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 MAB21L3Q8N8X9 362 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 CAMKVQ8NCB2 501 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 SGMS2Q8NHU3 365 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 SH3RF2Q8TEC5 729 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 LURAP1Q96LR2 239 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 COLEC11Q9BWP8 271 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 SPZ1Q9BXG8 430 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 SLC29A3Q9BZD2 475 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 WDR11Q9BZH6 1224 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 PLEKHA5Q9HAU0 1116 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 ATP6V0A4Q9HBG4 840 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 PXMP2Q9NR77 195 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 NLGN3Q9NZ94 848 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 KIAA1468Q9P260 1216 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 UXTQ9UBK9 157 aaPredicted RBP1.79□□□□□ -2.12
LINC00643-201ENST00000334389 KCNN3Q9UGI6 736 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 ZNF835Q9Y2P0 537 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 MAP3K2Q9Y2U5 619 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 TMEM184BQ9Y519 407 aaPredicted RBP1.79□□□□□ -2.12
LINC00643-201ENST00000334389 KAT6AQ92794 2004 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 TPRP12270 2363 aaKnown RBP1.79□□□□□ -2.12
LINC00643-201ENST00000334389 A0A087X0B3 334 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 CYP2D7A0A087X1C5 515 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 GOLGA8QA0A0J9YX86 632 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 GOLGA8OA6NCC3 632 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 SFI1A8K8P3 1242 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 TCP10L2B9ZVM9 353 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 GOLGA8NF8WBI6 632 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 GOLGA8RI6L899 631 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 TBX3O15119 743 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 FANCGO15287 622 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 MEFVO15553 781 aaPredicted RBP1.79□□□□□ -2.12
LINC00643-201ENST00000334389 DNAJC6O75061 913 aa1.79□□□□□ -2.12
LINC00643-201ENST00000334389 FOSP01100 380 aaPredicted RBP1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms