RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 RBBP8Q99708 897 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TRIM9Q9C026 710 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PLGRKTQ9HBL7 147 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 APPL1Q9UKG1 709 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 GRID1Q9ULK0 1009 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TNS3Q68CZ2 1445 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF701M0R085 212 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PMM2O15305 246 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 LZTS3O60299 673 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 KRT19P08727 400 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 THRAP10827 490 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ATP1A2P50993 1020 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 FAM160B1Q5W0V3 765 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 KYAT3Q6YP21 454 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TBC1D19Q8N5T2 526 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 XXYLT1Q8NBI6 393 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 OSCP1Q8WVF1 389 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TUBGCP3Q96CW5 907 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 C2orf40Q9H1Z8 148 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PLEKHA4Q9H4M7 779 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 EMILIN3Q9NT22 766 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PAK5Q9P286 719 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 RABL2AQ9UBK7 228 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 HEG1Q9ULI3 1381 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PRPF19Q9UMS4 504 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 RABL2BQ9UNT1 228 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 THRAP3Q9Y2W1 955 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 VWA5AO00534 786 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 RUNX1T1Q06455 604 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 MSLNQ13421 630 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 BLMHQ13867 455 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 KRT72Q14CN4 511 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PCBP1Q15365 356 aaKnown RBP eCLIP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ZCWPW2Q504Y3 356 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 MEI1Q5TIA1 1274 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 C1orf146Q5VVC0 180 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 FGD2Q7Z6J4 655 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 NCAPG2Q86XI2 1143 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 UBXN6Q9BZV1 441 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 MTMR12Q9C0I1 747 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 FAM53CQ9NYF3 392 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PIK3C2BO00750 1634 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 RBAK-RBAKDNI3L0D1 243 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 GAS7O60861 476 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 SAT1P21673 171 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 EFNA5P52803 228 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 POLGP54098 1239 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 E2F5Q15329 346 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ARL13BQ3SXY8 428 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ADGRG6Q86SQ4 1221 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ANKRD13AQ8IZ07 590 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 NGLY1Q96IV0 654 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 RSAD1Q9HA92 442 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ANKRD6Q9Y2G4 727 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TRDMT1O14717 391 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ANGPT2O15123 496 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ITGA10O75578 1167 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 HNRNPCP07910 306 aaKnown RBP eCLIP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 FDFT1P37268 417 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PTH1RQ03431 593 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ART3Q13508 389 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 DPYSQ14117 519 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF268Q14587 947 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ZNF174Q15697 407 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 LRRC8EQ6NSJ5 796 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 DNAJC24Q6P3W2 148 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 NLRP10Q86W26 655 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 RELL1Q8IUW5 271 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 GRPEL2Q8TAA5 225 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 DEPDC7Q96QD5 511 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 RRN3Q9NYV6 651 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 BTBD18B2RXH4 712 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PEX1O43933 1283 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 GCP02774 474 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 SLC1A4P43007 532 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TRPC1P48995 793 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 SARSP49591 514 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ARL4DP49703 201 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 PLTPP55058 493 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 SNAP25P60880 206 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 POLR2FP61218 127 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 BFSP2Q13515 415 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 TDRPQ86YL5 185 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 CDC26Q8NHZ8 85 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ANKRD49Q8WVL7 239 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 RAD54LQ92698 747 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 SLCO2A1Q92959 643 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 THAP11Q96EK4 314 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 RBM17Q96I25 401 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 RNPC3Q96LT9 517 aaKnown RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ING2Q9H160 280 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 MAN1C1Q9NR34 630 aa5.49□□□□□ -1.53
SCN1A-201ENST00000303395 ABI2Q9NYB9 513 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-201ENST00000303395 KBTBD13C9JR72 458 aa5.48□□□□□ -1.53
SCN1A-201ENST00000303395 ARL4AP40617 200 aa5.48□□□□□ -1.53
SCN1A-201ENST00000303395 RECQLP46063 649 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-201ENST00000303395 DMPKQ09013 629 aa5.48□□□□□ -1.53
SCN1A-201ENST00000303395 CSTF3Q12996 717 aaKnown RBP5.48□□□□□ -1.53
SCN1A-201ENST00000303395 TBC1D10BQ4KMP7 808 aaPredicted RBP5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms