RNA–Protein interactions for RNA: ENST00000640931.1

RTTN-223, Transcript of rotatin, human

TSL 5

Gene RTTN, Length 2,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTTN-223	ENST00000640931	FANCA	O15360	1455 aa		10.54	□□□□□ -0.72
RTTN-223	ENST00000640931	KDM5D	Q9BY66	1539 aa		10.54	□□□□□ -0.72
RTTN-223	ENST00000640931	SCAPER	Q9BY12	1400 aa		10.53	□□□□□ -0.72
RTTN-223	ENST00000640931	ANP32A	P39687	249 aa	Known RBP	10.53	□□□□□ -0.72
RTTN-223	ENST00000640931	NPM1	P06748	294 aa	Known RBP eCLIP	10.53	□□□□□ -0.72
RTTN-223	ENST00000640931	NCL	P19338	710 aa	Known RBP	10.53	□□□□□ -0.72
RTTN-223	ENST00000640931	GSE1	Q14687	1217 aa		10.52	□□□□□ -0.73
RTTN-223	ENST00000640931	ZNF219	Q9P2Y4	722 aa	Predicted RBP	10.52	□□□□□ -0.73
RTTN-223	ENST00000640931	CCDC184	Q52MB2	194 aa		10.51	□□□□□ -0.73
RTTN-223	ENST00000640931	TEX2	Q8IWB9	1127 aa		10.51	□□□□□ -0.73
RTTN-223	ENST00000640931	ADGRL1	O94910	1474 aa		10.51	□□□□□ -0.73
RTTN-223	ENST00000640931	PLXNC1	O60486	1568 aa		10.51	□□□□□ -0.73
RTTN-223	ENST00000640931	PPM1G	O15355	546 aa	Predicted RBP	10.5	□□□□□ -0.73
RTTN-223	ENST00000640931	HAP1	P54257	671 aa	Predicted RBP	10.5	□□□□□ -0.73
RTTN-223	ENST00000640931	STAC3	Q96MF2	364 aa		10.5	□□□□□ -0.73
RTTN-223	ENST00000640931	ZFYVE16	Q7Z3T8	1539 aa		10.5	□□□□□ -0.73
RTTN-223	ENST00000640931	DUOX2	Q9NRD8	1548 aa		10.5	□□□□□ -0.73
RTTN-223	ENST00000640931	ABCA9	Q8IUA7	1624 aa		10.5	□□□□□ -0.73
RTTN-223	ENST00000640931	UNC13B	O14795	1591 aa		10.5	□□□□□ -0.73
RTTN-223	ENST00000640931	SPATA31E1	Q6ZUB1	1445 aa		10.5	□□□□□ -0.73
RTTN-223	ENST00000640931	CCDC7	Q96M83	1385 aa		10.5	□□□□□ -0.73
RTTN-223	ENST00000640931	KIF7	Q2M1P5	1343 aa		10.5	□□□□□ -0.73
RTTN-223	ENST00000640931	KIF3B	O15066	747 aa		10.49	□□□□□ -0.73
RTTN-223	ENST00000640931	ANP32C	O43423	234 aa		10.49	□□□□□ -0.73
RTTN-223	ENST00000640931	CHRM1	P11229	460 aa	Predicted RBP	10.49	□□□□□ -0.73
RTTN-223	ENST00000640931	NBPF1	Q3BBV0	1214 aa		10.49	□□□□□ -0.73
RTTN-223	ENST00000640931	ILDR2	Q71H61	639 aa		10.49	□□□□□ -0.73
RTTN-223	ENST00000640931	FTSJ3	Q8IY81	847 aa	Known RBP	10.49	□□□□□ -0.73
RTTN-223	ENST00000640931	RAPGEF3	O95398	923 aa		10.48	□□□□□ -0.73
RTTN-223	ENST00000640931	USP47	Q96K76	1375 aa		10.48	□□□□□ -0.73
RTTN-223	ENST00000640931	HSP90B1	P14625	803 aa	Known RBP	10.48	□□□□□ -0.73
RTTN-223	ENST00000640931	C14orf37	Q86TY3	774 aa		10.48	□□□□□ -0.73
RTTN-223	ENST00000640931	KIF13A	Q9H1H9	1805 aa		10.47	□□□□□ -0.73
RTTN-223	ENST00000640931	CD109	Q6YHK3	1445 aa		10.47	□□□□□ -0.73
RTTN-223	ENST00000640931	BCORL1	Q5H9F3	1711 aa		10.47	□□□□□ -0.73
RTTN-223	ENST00000640931	ZFP91	Q96JP5	570 aa	Predicted RBP	10.47	□□□□□ -0.73
RTTN-223	ENST00000640931	CARD11	Q9BXL7	1154 aa		10.47	□□□□□ -0.73
RTTN-223	ENST00000640931	CCDC144A	A2RUR9	1427 aa		10.47	□□□□□ -0.73
RTTN-223	ENST00000640931	ERBIN	Q96RT1	1412 aa		10.47	□□□□□ -0.73
RTTN-223	ENST00000640931	PDCL3	Q9H2J4	239 aa		10.46	□□□□□ -0.73
RTTN-223	ENST00000640931	FBXO3	Q9UK99	471 aa		10.46	□□□□□ -0.73
RTTN-223	ENST00000640931	IQGAP3	Q86VI3	1631 aa		10.46	□□□□□ -0.73
RTTN-223	ENST00000640931	ATP7A	Q04656	1500 aa		10.46	□□□□□ -0.74
RTTN-223	ENST00000640931	RGS3	P49796	1198 aa		10.46	□□□□□ -0.74
RTTN-223	ENST00000640931	DISP3	Q9P2K9	1392 aa		10.46	□□□□□ -0.74
RTTN-223	ENST00000640931	A2M	P01023	1474 aa		10.45	□□□□□ -0.74
RTTN-223	ENST00000640931	ST20-MTHFS	A0A0A6YYL1	179 aa		10.45	□□□□□ -0.74
RTTN-223	ENST00000640931	ARID4B	Q4LE39	1312 aa	Predicted RBP	10.45	□□□□□ -0.74
RTTN-223	ENST00000640931	MAGI2	Q86UL8	1455 aa		10.44	□□□□□ -0.74
RTTN-223	ENST00000640931	INO80	Q9ULG1	1556 aa	Predicted RBP	10.44	□□□□□ -0.74
RTTN-223	ENST00000640931	SENP3-EIF4A1	A0A087X0R7	540 aa		10.44	□□□□□ -0.74
RTTN-223	ENST00000640931	RTEL1-TNFRSF6B	F6WH68	1400 aa		10.43	□□□□□ -0.74
RTTN-223	ENST00000640931	UHRF1BP1	Q6BDS2	1440 aa		10.43	□□□□□ -0.74
RTTN-223	ENST00000640931	ARAP3	Q8WWN8	1544 aa		10.43	□□□□□ -0.74
RTTN-223	ENST00000640931	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.43	□□□□□ -0.74
RTTN-223	ENST00000640931	PPP4R2	Q9NY27	417 aa		10.43	□□□□□ -0.74
RTTN-223	ENST00000640931	CNTLN	Q9NXG0	1405 aa		10.43	□□□□□ -0.74
RTTN-223	ENST00000640931	KDM5C	P41229	1560 aa		10.43	□□□□□ -0.74
RTTN-223	ENST00000640931	UGGT1	Q9NYU2	1555 aa		10.43	□□□□□ -0.74
RTTN-223	ENST00000640931		E9PCH4	1651 aa		10.43	□□□□□ -0.74
RTTN-223	ENST00000640931	GGT6	Q6P531	493 aa		10.42	□□□□□ -0.74
RTTN-223	ENST00000640931	ROCK2	O75116	1388 aa	Known RBP	10.42	□□□□□ -0.74
RTTN-223	ENST00000640931	RALGAPB	Q86X10	1494 aa		10.42	□□□□□ -0.74
RTTN-223	ENST00000640931	KIDINS220	Q9ULH0	1771 aa		10.42	□□□□□ -0.74
RTTN-223	ENST00000640931	ATP10A	O60312	1499 aa		10.42	□□□□□ -0.74
RTTN-223	ENST00000640931	DHX29	Q7Z478	1369 aa	Known RBP	10.42	□□□□□ -0.74
RTTN-223	ENST00000640931	PRAG1	Q86YV5	1406 aa		10.41	□□□□□ -0.74
RTTN-223	ENST00000640931	CCER2	I3L3R5	266 aa		10.4	□□□□□ -0.74
RTTN-223	ENST00000640931	MROH1	Q8NDA8	1641 aa		10.4	□□□□□ -0.74
RTTN-223	ENST00000640931	RBM42	Q9BTD8	480 aa	Known RBP	10.4	□□□□□ -0.75
RTTN-223	ENST00000640931	VGF	O15240	615 aa	Predicted RBP	10.39	□□□□□ -0.75
RTTN-223	ENST00000640931	SLC4A2	P04920	1241 aa		10.39	□□□□□ -0.75
RTTN-223	ENST00000640931	CDK11B	P21127	795 aa	Known RBP	10.39	□□□□□ -0.75
RTTN-223	ENST00000640931	SECISBP2L	Q93073	1101 aa	Known RBP	10.39	□□□□□ -0.75
RTTN-223	ENST00000640931	POGZ	Q7Z3K3	1410 aa		10.39	□□□□□ -0.75
RTTN-223	ENST00000640931	FAM69C	Q0P6D2	419 aa		10.38	□□□□□ -0.75
RTTN-223	ENST00000640931	PRKRIP1	Q9H875	184 aa	Predicted RBP	10.38	□□□□□ -0.75
RTTN-223	ENST00000640931	FRMPD1	Q5SYB0	1578 aa		10.38	□□□□□ -0.75
RTTN-223	ENST00000640931	CLTCL1	P53675	1640 aa		10.38	□□□□□ -0.75
RTTN-223	ENST00000640931	PNN	Q9H307	717 aa	Known RBP	10.38	□□□□□ -0.75
RTTN-223	ENST00000640931	SMAP1	Q8IYB5	467 aa	Predicted RBP	10.37	□□□□□ -0.75
RTTN-223	ENST00000640931	TRPM1	Q7Z4N2	1603 aa		10.37	□□□□□ -0.75
RTTN-223	ENST00000640931	ZNF518A	Q6AHZ1	1483 aa		10.37	□□□□□ -0.75
RTTN-223	ENST00000640931	FAM9B	Q8IZU0	186 aa		10.37	□□□□□ -0.75
RTTN-223	ENST00000640931	RRAGD	Q9NQL2	400 aa	Predicted RBP	10.37	□□□□□ -0.75
RTTN-223	ENST00000640931	DEPDC5	O75140	1603 aa		10.37	□□□□□ -0.75
RTTN-223	ENST00000640931	YEATS2	Q9ULM3	1422 aa		10.36	□□□□□ -0.75
RTTN-223	ENST00000640931	PRDM15	P57071	1507 aa	Predicted RBP	10.36	□□□□□ -0.75
RTTN-223	ENST00000640931	CHGA	P10645	457 aa	Known RBP	10.36	□□□□□ -0.75
RTTN-223	ENST00000640931	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.36	□□□□□ -0.75
RTTN-223	ENST00000640931	ABCA6	Q8N139	1617 aa		10.36	□□□□□ -0.75
RTTN-223	ENST00000640931	TPM2	P07951	284 aa		10.35	□□□□□ -0.75
RTTN-223	ENST00000640931	FRAT1	Q92837	279 aa	Predicted RBP	10.35	□□□□□ -0.75
RTTN-223	ENST00000640931	CFAP65	Q6ZU64	1925 aa	Known RBP	10.35	□□□□□ -0.75
RTTN-223	ENST00000640931	VWDE	Q8N2E2	1590 aa		10.35	□□□□□ -0.75
RTTN-223	ENST00000640931	CEP152	O94986	1710 aa		10.35	□□□□□ -0.75
RTTN-223	ENST00000640931	CLCN1	P35523	988 aa		10.35	□□□□□ -0.75
RTTN-223	ENST00000640931	KANK1	Q14678	1352 aa		10.35	□□□□□ -0.75
RTTN-223	ENST00000640931	PTPRT	O14522	1441 aa		10.35	□□□□□ -0.75
RTTN-223	ENST00000640931	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.34	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms