RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 SPATA31E1Q6ZUB1 1445 aa24.75■■□□□ 1.55
CLN3-256ENST00000637107 NUTM2DQ5VT03 806 aaPredicted RBP24.74■■□□□ 1.55
CLN3-256ENST00000637107 ANKLE2Q86XL3 938 aa24.74■■□□□ 1.55
CLN3-256ENST00000637107 NEUROD1Q13562 356 aa24.73■■□□□ 1.55
CLN3-256ENST00000637107 TXNDC2Q86VQ3 553 aa24.73■■□□□ 1.55
CLN3-256ENST00000637107 ZFYVE9O95405 1425 aa24.73■■□□□ 1.55
CLN3-256ENST00000637107 TIMELESSQ9UNS1 1208 aa24.73■■□□□ 1.55
CLN3-256ENST00000637107 RIMS2Q9UQ26 1411 aa24.72■■□□□ 1.55
CLN3-256ENST00000637107 POLR1AO95602 1720 aaPredicted RBP24.71■■□□□ 1.55
CLN3-256ENST00000637107 SCAF11Q99590 1463 aaKnown RBP24.7■■□□□ 1.54
CLN3-256ENST00000637107 EID1Q9Y6B2 187 aa24.7■■□□□ 1.54
CLN3-256ENST00000637107 NEURL4Q96JN8 1562 aa24.69■■□□□ 1.54
CLN3-256ENST00000637107 SENP3Q9H4L4 574 aaPredicted RBP24.69■■□□□ 1.54
CLN3-256ENST00000637107 NEXMIFQ5QGS0 1516 aa24.68■■□□□ 1.54
CLN3-256ENST00000637107 MIER1Q8N108 512 aa24.65■■□□□ 1.54
CLN3-256ENST00000637107 PPP1R15AO75807 674 aaPredicted RBP24.65■■□□□ 1.54
CLN3-256ENST00000637107 HDGFP51858 240 aaKnown RBP24.65■■□□□ 1.54
CLN3-256ENST00000637107 PPLO60437 1756 aa24.64■■□□□ 1.53
CLN3-256ENST00000637107 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.64■■□□□ 1.53
CLN3-256ENST00000637107 MED14O60244 1454 aa24.64■■□□□ 1.53
CLN3-256ENST00000637107 RPGRIP1LQ68CZ1 1315 aa24.63■■□□□ 1.53
CLN3-256ENST00000637107 NPHP4O75161 1426 aaPredicted RBP24.63■■□□□ 1.53
CLN3-256ENST00000637107 IFT172Q9UG01 1749 aa24.61■■□□□ 1.53
CLN3-256ENST00000637107 IQGAP1P46940 1657 aa24.61■■□□□ 1.53
CLN3-256ENST00000637107 VGFO15240 615 aaPredicted RBP24.59■■□□□ 1.53
CLN3-256ENST00000637107 PLEKHG1Q9ULL1 1385 aa24.59■■□□□ 1.53
CLN3-256ENST00000637107 DCAF11Q8TEB1 546 aa24.58■■□□□ 1.53
CLN3-256ENST00000637107 BCANQ96GW7 911 aa24.58■■□□□ 1.53
CLN3-256ENST00000637107 DMRT2Q9Y5R5 561 aa24.58■■□□□ 1.53
CLN3-256ENST00000637107 ADGRF5Q8IZF2 1346 aa24.58■■□□□ 1.52
CLN3-256ENST00000637107 KDM2AQ9Y2K7 1162 aa24.57■■□□□ 1.52
CLN3-256ENST00000637107 SLC26A8Q96RN1 970 aa24.56■■□□□ 1.52
CLN3-256ENST00000637107 L3MBTL2Q969R5 705 aa24.54■■□□□ 1.52
CLN3-256ENST00000637107 TONSLQ96HA7 1378 aa24.53■■□□□ 1.52
CLN3-256ENST00000637107 NRXN3Q9Y4C0 1643 aa24.52■■□□□ 1.52
CLN3-256ENST00000637107 ADAMTS13Q76LX8 1427 aa24.51■■□□□ 1.51
CLN3-256ENST00000637107 MYOM2P54296 1465 aa24.51■■□□□ 1.51
CLN3-256ENST00000637107 SETBP1Q9Y6X0 1596 aa24.5■■□□□ 1.51
CLN3-256ENST00000637107 CENPBP07199 599 aaPredicted RBP24.49■■□□□ 1.51
CLN3-256ENST00000637107 NRXN1Q9ULB1 1477 aa24.48■■□□□ 1.51
CLN3-256ENST00000637107 PIK3C2GO75747 1445 aa24.48■■□□□ 1.51
CLN3-256ENST00000637107 TBX22Q9Y458 520 aa24.45■■□□□ 1.51
CLN3-256ENST00000637107 ZNF335Q9H4Z2 1342 aaPredicted RBP24.45■■□□□ 1.5
CLN3-256ENST00000637107 ALKQ9UM73 1620 aa24.45■■□□□ 1.5
CLN3-256ENST00000637107 STAC3Q96MF2 364 aa24.44■■□□□ 1.5
CLN3-256ENST00000637107 SETD1AO15047 1707 aaKnown RBP24.42■■□□□ 1.5
CLN3-256ENST00000637107 DIP2AQ14689 1571 aa24.42■■□□□ 1.5
CLN3-256ENST00000637107 METP08581 1390 aa24.42■■□□□ 1.5
CLN3-256ENST00000637107 CFAP70Q5T0N1 1121 aa24.41■■□□□ 1.5
CLN3-256ENST00000637107 SCAF1Q9H7N4 1312 aaKnown RBP24.4■■□□□ 1.5
CLN3-256ENST00000637107 C14orf93Q9H972 538 aaKnown RBP24.39■■□□□ 1.5
CLN3-256ENST00000637107 STRCP1A6NGW2 1772 aa24.39■■□□□ 1.5
CLN3-256ENST00000637107 PRAG1Q86YV5 1406 aa24.39■■□□□ 1.5
CLN3-256ENST00000637107 PTPRUQ92729 1446 aa24.37■■□□□ 1.49
CLN3-256ENST00000637107 TMEM132EQ6IEE7 984 aa24.37■■□□□ 1.49
CLN3-256ENST00000637107 CHD2O14647 1828 aaKnown RBP24.37■■□□□ 1.49
CLN3-256ENST00000637107 NBPF8Q3BBV2 869 aa24.35■■□□□ 1.49
CLN3-256ENST00000637107 YTHDC1Q96MU7 727 aaKnown RBP24.35■■□□□ 1.49
CLN3-256ENST00000637107 ASXL1Q8IXJ9 1541 aa24.34■■□□□ 1.49
CLN3-256ENST00000637107 KCNA6P17658 529 aa24.34■■□□□ 1.49
CLN3-256ENST00000637107 PIK3R4Q99570 1358 aa24.34■■□□□ 1.49
CLN3-256ENST00000637107 LAMC1P11047 1609 aa24.34■■□□□ 1.49
CLN3-256ENST00000637107 LTBP4Q8N2S1 1624 aa24.34■■□□□ 1.49
CLN3-256ENST00000637107 AMOTL2Q9Y2J4 779 aa24.33■■□□□ 1.49
CLN3-256ENST00000637107 NBPF1Q3BBV0 1214 aa24.31■■□□□ 1.48
CLN3-256ENST00000637107 NWD1Q149M9 1564 aa24.31■■□□□ 1.48
CLN3-256ENST00000637107 ADGRB1O14514 1584 aa24.29■■□□□ 1.48
CLN3-256ENST00000637107 STK26Q9P289 416 aa24.28■■□□□ 1.48
CLN3-256ENST00000637107 XRN1Q8IZH2 1706 aaKnown RBP24.28■■□□□ 1.48
CLN3-256ENST00000637107 KIAA1210Q9ULL0 1709 aa24.28■■□□□ 1.48
CLN3-256ENST00000637107 RBM33Q96EV2 1170 aaKnown RBP24.27■■□□□ 1.48
CLN3-256ENST00000637107 TRPM1Q7Z4N2 1603 aa24.27■■□□□ 1.48
CLN3-256ENST00000637107 YTHDC2Q9H6S0 1430 aaKnown RBP24.26■■□□□ 1.47
CLN3-256ENST00000637107 HIRIP3Q9BW71 556 aaPredicted RBP24.25■■□□□ 1.47
CLN3-256ENST00000637107 CPS1P31327 1500 aa24.25■■□□□ 1.47
CLN3-256ENST00000637107 LRPPRCP42704 1394 aaKnown RBP24.24■■□□□ 1.47
CLN3-256ENST00000637107 NKTRP30414 1462 aaKnown RBP24.24■■□□□ 1.47
CLN3-256ENST00000637107 LRRC7Q96NW7 1537 aa24.24■■□□□ 1.47
CLN3-256ENST00000637107 PROSER2Q86WR7 435 aaPredicted RBP24.23■■□□□ 1.47
CLN3-256ENST00000637107 DDX10Q13206 875 aaKnown RBP24.23■■□□□ 1.47
CLN3-256ENST00000637107 ROBO2Q9HCK4 1378 aa24.22■■□□□ 1.47
CLN3-256ENST00000637107 ROCK2O75116 1388 aaKnown RBP24.21■■□□□ 1.47
CLN3-256ENST00000637107 ABCC11Q96J66 1382 aa24.21■■□□□ 1.47
CLN3-256ENST00000637107 TRAK1Q9UPV9 953 aa24.2■■□□□ 1.46
CLN3-256ENST00000637107 TMEM94Q12767 1356 aa24.2■■□□□ 1.46
CLN3-256ENST00000637107 XIRP1Q702N8 1843 aaKnown RBP24.19■■□□□ 1.46
CLN3-256ENST00000637107 TECPR2O15040 1411 aa24.19■■□□□ 1.46
CLN3-256ENST00000637107 KNDC1Q76NI1 1749 aa24.18■■□□□ 1.46
CLN3-256ENST00000637107 RALGAPBQ86X10 1494 aa24.18■■□□□ 1.46
CLN3-256ENST00000637107 PTCH1Q13635 1447 aa24.18■■□□□ 1.46
CLN3-256ENST00000637107 WAPLQ7Z5K2 1190 aa24.18■■□□□ 1.46
CLN3-256ENST00000637107 CERKQ8TCT0 537 aa24.18■■□□□ 1.46
CLN3-256ENST00000637107 PLEKHH1Q9ULM0 1364 aa24.15■■□□□ 1.46
CLN3-256ENST00000637107 GPRASP1Q5JY77 1395 aa24.14■■□□□ 1.46
CLN3-256ENST00000637107 PRAM1Q96QH2 718 aa24.13■■□□□ 1.45
CLN3-256ENST00000637107 CARD11Q9BXL7 1154 aa24.13■■□□□ 1.45
CLN3-256ENST00000637107 DLC1Q96QB1 1528 aa24.12■■□□□ 1.45
CLN3-256ENST00000637107 ARHGEF28Q8N1W1 1705 aaKnown RBP24.12■■□□□ 1.45
CLN3-256ENST00000637107 SAFB2Q14151 953 aaKnown RBP eCLIP24.12■■□□□ 1.45
CLN3-256ENST00000637107 C14orf37Q86TY3 774 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms