RNA–Protein interactions for RNA: ENST00000636214.1

PNKP-225, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 805 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-225ENST00000636214 RIMS2Q9UQ26 1411 aa27.14■■□□□ 1.93
PNKP-225ENST00000636214 HSPA1LP34931 641 aa27.13■■□□□ 1.93
PNKP-225ENST00000636214 TMEM131LA2VDJ0 1609 aa27.12■■□□□ 1.93
PNKP-225ENST00000636214 KCNA6P17658 529 aa27.11■■□□□ 1.93
PNKP-225ENST00000636214 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.11■■□□□ 1.93
PNKP-225ENST00000636214 PLEKHG1Q9ULL1 1385 aa27.09■■□□□ 1.93
PNKP-225ENST00000636214 ZFYVE9O95405 1425 aa27.09■■□□□ 1.93
PNKP-225ENST00000636214 SENP3Q9H4L4 574 aaPredicted RBP27.09■■□□□ 1.93
PNKP-225ENST00000636214 PROSER2Q86WR7 435 aaPredicted RBP27.06■■□□□ 1.92
PNKP-225ENST00000636214 ALKQ9UM73 1620 aa27.05■■□□□ 1.92
PNKP-225ENST00000636214 TMEM94Q12767 1356 aa27.04■■□□□ 1.92
PNKP-225ENST00000636214 NKTRP30414 1462 aaKnown RBP27.04■■□□□ 1.92
PNKP-225ENST00000636214 SPHKAPQ2M3C7 1700 aa27.03■■□□□ 1.92
PNKP-225ENST00000636214 XIRP1Q702N8 1843 aaKnown RBP27.03■■□□□ 1.92
PNKP-225ENST00000636214 NAIPQ13075 1403 aa27.01■■□□□ 1.91
PNKP-225ENST00000636214 NWD1Q149M9 1564 aa27.01■■□□□ 1.91
PNKP-225ENST00000636214 NUTM2DQ5VT03 806 aaPredicted RBP27■■□□□ 1.91
PNKP-225ENST00000636214 TRIM52Q96A61 297 aa26.99■■□□□ 1.91
PNKP-225ENST00000636214 ZNF326Q5BKZ1 582 aaKnown RBP26.97■■□□□ 1.91
PNKP-225ENST00000636214 TBX22Q9Y458 520 aa26.97■■□□□ 1.91
PNKP-225ENST00000636214 HFM1A2PYH4 1435 aa26.97■■□□□ 1.91
PNKP-225ENST00000636214 DIP2AQ14689 1571 aa26.96■■□□□ 1.91
PNKP-225ENST00000636214 MSH6P52701 1360 aa26.96■■□□□ 1.91
PNKP-225ENST00000636214 CHD2O14647 1828 aaKnown RBP26.95■■□□□ 1.91
PNKP-225ENST00000636214 ILDR2Q71H61 639 aa26.95■■□□□ 1.9
PNKP-225ENST00000636214 RBM33Q96EV2 1170 aaKnown RBP26.94■■□□□ 1.9
PNKP-225ENST00000636214 MED1Q15648 1581 aaPredicted RBP26.92■■□□□ 1.9
PNKP-225ENST00000636214 C14orf37Q86TY3 774 aa26.91■■□□□ 1.9
PNKP-225ENST00000636214 PIK3R4Q99570 1358 aa26.9■■□□□ 1.9
PNKP-225ENST00000636214 TRPM2O94759 1503 aa26.9■■□□□ 1.9
PNKP-225ENST00000636214 ADAMTS13Q76LX8 1427 aa26.9■■□□□ 1.9
PNKP-225ENST00000636214 FAM135BQ49AJ0 1406 aa26.89■■□□□ 1.89
PNKP-225ENST00000636214 PHF23Q9BUL5 403 aaPredicted RBP26.88■■□□□ 1.89
PNKP-225ENST00000636214 SLC4A1APQ9BWU0 796 aaKnown RBP26.87■■□□□ 1.89
PNKP-225ENST00000636214 KIF1BO60333 1816 aa26.87■■□□□ 1.89
PNKP-225ENST00000636214 CLTCL1P53675 1640 aa26.86■■□□□ 1.89
PNKP-225ENST00000636214 NCOA3Q9Y6Q9 1424 aa26.83■■□□□ 1.89
PNKP-225ENST00000636214 SOCS7O14512 581 aa26.83■■□□□ 1.89
PNKP-225ENST00000636214 ROBO1Q9Y6N7 1651 aa26.82■■□□□ 1.88
PNKP-225ENST00000636214 SLAIN2Q9P270 581 aa26.8■■□□□ 1.88
PNKP-225ENST00000636214 AMOTL2Q9Y2J4 779 aa26.8■■□□□ 1.88
PNKP-225ENST00000636214 SETBP1Q9Y6X0 1596 aa26.8■■□□□ 1.88
PNKP-225ENST00000636214 ATF3P18847 181 aa26.77■■□□□ 1.88
PNKP-225ENST00000636214 NEXMIFQ5QGS0 1516 aa26.76■■□□□ 1.87
PNKP-225ENST00000636214 CADPS2Q86UW7 1296 aa26.76■■□□□ 1.87
PNKP-225ENST00000636214 NRXN3Q9Y4C0 1643 aa26.76■■□□□ 1.87
PNKP-225ENST00000636214 C19orf44Q9H6X5 657 aa26.74■■□□□ 1.87
PNKP-225ENST00000636214 PTPRUQ92729 1446 aa26.73■■□□□ 1.87
PNKP-225ENST00000636214 VGFO15240 615 aaPredicted RBP26.72■■□□□ 1.87
PNKP-225ENST00000636214 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.7■■□□□ 1.87
PNKP-225ENST00000636214 RPGRIP1LQ68CZ1 1315 aa26.7■■□□□ 1.87
PNKP-225ENST00000636214 PHLPP1O60346 1717 aa26.7■■□□□ 1.86
PNKP-225ENST00000636214 ACIN1Q9UKV3 1341 aaKnown RBP26.69■■□□□ 1.86
PNKP-225ENST00000636214 XRN1Q8IZH2 1706 aaKnown RBP26.69■■□□□ 1.86
PNKP-225ENST00000636214 METP08581 1390 aa26.68■■□□□ 1.86
PNKP-225ENST00000636214 CCDC144AA2RUR9 1427 aa26.67■■□□□ 1.86
PNKP-225ENST00000636214 FOXD1Q16676 465 aa26.66■■□□□ 1.86
PNKP-225ENST00000636214 DCCP43146 1447 aa26.65■■□□□ 1.86
PNKP-225ENST00000636214 MPHOSPH9Q99550 1183 aa26.64■■□□□ 1.86
PNKP-225ENST00000636214 PPLO60437 1756 aa26.61■■□□□ 1.85
PNKP-225ENST00000636214 JCADQ9P266 1359 aa26.61■■□□□ 1.85
PNKP-225ENST00000636214 SETD5Q9C0A6 1442 aa26.61■■□□□ 1.85
PNKP-225ENST00000636214 ADGRL3Q9HAR2 1447 aa26.56■■□□□ 1.84
PNKP-225ENST00000636214 RGL3Q3MIN7 710 aa26.56■■□□□ 1.84
PNKP-225ENST00000636214 COL16A1Q07092 1604 aaPredicted RBP26.56■■□□□ 1.84
PNKP-225ENST00000636214 AHDC1Q5TGY3 1603 aaPredicted RBP26.55■■□□□ 1.84
PNKP-225ENST00000636214 PTCH1Q13635 1447 aa26.55■■□□□ 1.84
PNKP-225ENST00000636214 BRINP3Q76B58 766 aa26.53■■□□□ 1.84
PNKP-225ENST00000636214 SETD1AO15047 1707 aaKnown RBP26.53■■□□□ 1.84
PNKP-225ENST00000636214 ANKRD30BQ9BXX2 1392 aa26.52■■□□□ 1.84
PNKP-225ENST00000636214 MST1RQ04912 1400 aa26.51■■□□□ 1.83
PNKP-225ENST00000636214 NALCNQ8IZF0 1738 aa26.51■■□□□ 1.83
PNKP-225ENST00000636214 ASXL1Q8IXJ9 1541 aa26.49■■□□□ 1.83
PNKP-225ENST00000636214 SPATA31A6Q5VVP1 1343 aa26.49■■□□□ 1.83
PNKP-225ENST00000636214 SPATA31E1Q6ZUB1 1445 aa26.48■■□□□ 1.83
PNKP-225ENST00000636214 RAB3GAP2Q9H2M9 1393 aa26.48■■□□□ 1.83
PNKP-225ENST00000636214 MEX3CQ5U5Q3 659 aaKnown RBP26.48■■□□□ 1.83
PNKP-225ENST00000636214 ROBO2Q9HCK4 1378 aa26.47■■□□□ 1.83
PNKP-225ENST00000636214 ADGRF5Q8IZF2 1346 aa26.47■■□□□ 1.83
PNKP-225ENST00000636214 RGS17Q9UGC6 210 aaPredicted RBP26.46■■□□□ 1.83
PNKP-225ENST00000636214 PRAG1Q86YV5 1406 aa26.45■■□□□ 1.82
PNKP-225ENST00000636214 SHPRHQ149N8 1683 aa26.44■■□□□ 1.82
PNKP-225ENST00000636214 IFT172Q9UG01 1749 aa26.44■■□□□ 1.82
PNKP-225ENST00000636214 NHSL1Q5SYE7 1610 aa26.41■■□□□ 1.82
PNKP-225ENST00000636214 STK26Q9P289 416 aa26.4■■□□□ 1.82
PNKP-225ENST00000636214 C1orf167Q5SNV9 1468 aa26.4■■□□□ 1.82
PNKP-225ENST00000636214 LRRC59Q96AG4 307 aaKnown RBP26.39■■□□□ 1.82
PNKP-225ENST00000636214 PIK3C2GO75747 1445 aa26.38■■□□□ 1.81
PNKP-225ENST00000636214 POTEAQ6S8J7 498 aa26.37■■□□□ 1.81
PNKP-225ENST00000636214 NUTM2BA6NNL0 878 aaPredicted RBP26.36■■□□□ 1.81
PNKP-225ENST00000636214 NUTM2EB1AL46 878 aaPredicted RBP26.36■■□□□ 1.81
PNKP-225ENST00000636214 NUTM2AQ8IVF1 878 aaPredicted RBP26.36■■□□□ 1.81
PNKP-225ENST00000636214 LRP6O75581 1613 aa26.36■■□□□ 1.81
PNKP-225ENST00000636214 LRPPRCP42704 1394 aaKnown RBP26.35■■□□□ 1.81
PNKP-225ENST00000636214 TECPR2O15040 1411 aa26.33■■□□□ 1.81
PNKP-225ENST00000636214 ZNF772Q68DY9 489 aaPredicted RBP26.33■■□□□ 1.81
PNKP-225ENST00000636214 TMEM132EQ6IEE7 984 aa26.33■■□□□ 1.81
PNKP-225ENST00000636214 DDX17Q92841 729 aaKnown RBP26.33■■□□□ 1.81
PNKP-225ENST00000636214 KNDC1Q76NI1 1749 aa26.32■■□□□ 1.8
PNKP-225ENST00000636214 CDC42BPGQ6DT37 1551 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms