RNA–Protein interactions for RNA: ENST00000636058.1

CACNA1A-223, Transcript of calcium voltage-gated channel subunit alpha1 A, human

TSL 5

Gene CACNA1A, Length 656 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1A-223	ENST00000636058	ZNF326	Q5BKZ1	582 aa	Known RBP	13.7	□□□□□ -0.22
CACNA1A-223	ENST00000636058	RALGAPB	Q86X10	1494 aa		13.69	□□□□□ -0.22
CACNA1A-223	ENST00000636058	TRPM1	Q7Z4N2	1603 aa		13.69	□□□□□ -0.22
CACNA1A-223	ENST00000636058	ZFYVE9	O95405	1425 aa		13.68	□□□□□ -0.22
CACNA1A-223	ENST00000636058	PLPPR3	Q6T4P5	718 aa		13.68	□□□□□ -0.22
CACNA1A-223	ENST00000636058	STAG3	Q9UJ98	1225 aa		13.68	□□□□□ -0.22
CACNA1A-223	ENST00000636058	ZNF142	P52746	1687 aa	Predicted RBP	13.68	□□□□□ -0.22
CACNA1A-223	ENST00000636058	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.67	□□□□□ -0.22
CACNA1A-223	ENST00000636058	KIAA1210	Q9ULL0	1709 aa		13.67	□□□□□ -0.22
CACNA1A-223	ENST00000636058	KDM4F	A0A1W2PPD8	638 aa		13.66	□□□□□ -0.22
CACNA1A-223	ENST00000636058	ADGRF5	Q8IZF2	1346 aa		13.65	□□□□□ -0.22
CACNA1A-223	ENST00000636058	SETD1B	Q9UPS6	1966 aa	Known RBP	13.65	□□□□□ -0.22
CACNA1A-223	ENST00000636058	PIK3C2G	O75747	1445 aa		13.65	□□□□□ -0.22
CACNA1A-223	ENST00000636058	RIMS2	Q9UQ26	1411 aa		13.64	□□□□□ -0.23
CACNA1A-223	ENST00000636058	TMEM2	Q9UHN6	1383 aa		13.64	□□□□□ -0.23
CACNA1A-223	ENST00000636058	VGF	O15240	615 aa	Predicted RBP	13.64	□□□□□ -0.23
CACNA1A-223	ENST00000636058	LAMC1	P11047	1609 aa		13.64	□□□□□ -0.23
CACNA1A-223	ENST00000636058	SLIT1	O75093	1534 aa		13.64	□□□□□ -0.23
CACNA1A-223	ENST00000636058	ARHGAP23	Q9P227	1491 aa		13.63	□□□□□ -0.23
CACNA1A-223	ENST00000636058	GPRASP1	Q5JY77	1395 aa		13.63	□□□□□ -0.23
CACNA1A-223	ENST00000636058	ROCK2	O75116	1388 aa	Known RBP	13.61	□□□□□ -0.23
CACNA1A-223	ENST00000636058	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.6	□□□□□ -0.23
CACNA1A-223	ENST00000636058	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.6	□□□□□ -0.23
CACNA1A-223	ENST00000636058	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
CACNA1A-223	ENST00000636058	SETBP1	Q9Y6X0	1596 aa		13.6	□□□□□ -0.23
CACNA1A-223	ENST00000636058	HDGF	P51858	240 aa	Known RBP	13.59	□□□□□ -0.23
CACNA1A-223	ENST00000636058	NBPF1	Q3BBV0	1214 aa		13.59	□□□□□ -0.23
CACNA1A-223	ENST00000636058	NRXN3	Q9Y4C0	1643 aa		13.58	□□□□□ -0.24
CACNA1A-223	ENST00000636058	CFAP70	Q5T0N1	1121 aa		13.58	□□□□□ -0.24
CACNA1A-223	ENST00000636058	CARD11	Q9BXL7	1154 aa		13.58	□□□□□ -0.24
CACNA1A-223	ENST00000636058	C14orf93	Q9H972	538 aa	Known RBP	13.58	□□□□□ -0.24
CACNA1A-223	ENST00000636058	ADGRB1	O14514	1584 aa		13.58	□□□□□ -0.24
CACNA1A-223	ENST00000636058	IQGAP1	P46940	1657 aa		13.57	□□□□□ -0.24
CACNA1A-223	ENST00000636058	USP47	Q96K76	1375 aa		13.57	□□□□□ -0.24
CACNA1A-223	ENST00000636058	ALK	Q9UM73	1620 aa		13.57	□□□□□ -0.24
CACNA1A-223	ENST00000636058	SETD1A	O15047	1707 aa	Known RBP	13.56	□□□□□ -0.24
CACNA1A-223	ENST00000636058	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.56	□□□□□ -0.24
CACNA1A-223	ENST00000636058	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
CACNA1A-223	ENST00000636058	PLEKHG1	Q9ULL1	1385 aa		13.56	□□□□□ -0.24
CACNA1A-223	ENST00000636058	ASXL1	Q8IXJ9	1541 aa		13.55	□□□□□ -0.24
CACNA1A-223	ENST00000636058	HSPA5	P11021	654 aa	Known RBP	13.55	□□□□□ -0.24
CACNA1A-223	ENST00000636058	LTK	P29376	864 aa		13.55	□□□□□ -0.24
CACNA1A-223	ENST00000636058	EID1	Q9Y6B2	187 aa		13.55	□□□□□ -0.24
CACNA1A-223	ENST00000636058	SCAF11	Q99590	1463 aa	Known RBP	13.55	□□□□□ -0.24
CACNA1A-223	ENST00000636058	TXNDC2	Q86VQ3	553 aa		13.54	□□□□□ -0.24
CACNA1A-223	ENST00000636058	ADAMTS13	Q76LX8	1427 aa		13.52	□□□□□ -0.25
CACNA1A-223	ENST00000636058	POLR1A	O95602	1720 aa	Predicted RBP	13.51	□□□□□ -0.25
CACNA1A-223	ENST00000636058	MED14	O60244	1454 aa		13.51	□□□□□ -0.25
CACNA1A-223	ENST00000636058	LMTK3	Q96Q04	1460 aa		13.51	□□□□□ -0.25
CACNA1A-223	ENST00000636058	DIP2A	Q14689	1571 aa		13.5	□□□□□ -0.25
CACNA1A-223	ENST00000636058	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.5	□□□□□ -0.25
CACNA1A-223	ENST00000636058	TMEM132E	Q6IEE7	984 aa		13.49	□□□□□ -0.25
CACNA1A-223	ENST00000636058	ANKLE2	Q86XL3	938 aa		13.49	□□□□□ -0.25
CACNA1A-223	ENST00000636058	SENP3	Q9H4L4	574 aa	Predicted RBP	13.49	□□□□□ -0.25
CACNA1A-223	ENST00000636058	EIF3A	Q14152	1382 aa	Known RBP	13.48	□□□□□ -0.25
CACNA1A-223	ENST00000636058	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.48	□□□□□ -0.25
CACNA1A-223	ENST00000636058	ST20-MTHFS	A0A0A6YYL1	179 aa		13.48	□□□□□ -0.25
CACNA1A-223	ENST00000636058	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.47	□□□□□ -0.25
CACNA1A-223	ENST00000636058	MET	P08581	1390 aa		13.47	□□□□□ -0.25
CACNA1A-223	ENST00000636058	DLC1	Q96QB1	1528 aa		13.46	□□□□□ -0.25
CACNA1A-223	ENST00000636058	BCAN	Q96GW7	911 aa		13.46	□□□□□ -0.25
CACNA1A-223	ENST00000636058	TBX22	Q9Y458	520 aa		13.46	□□□□□ -0.25
CACNA1A-223	ENST00000636058	KNDC1	Q76NI1	1749 aa		13.46	□□□□□ -0.25
CACNA1A-223	ENST00000636058	NPHP4	O75161	1426 aa	Predicted RBP	13.46	□□□□□ -0.26
CACNA1A-223	ENST00000636058	LRPPRC	P42704	1394 aa	Known RBP	13.45	□□□□□ -0.26
CACNA1A-223	ENST00000636058	TESK2	Q96S53	571 aa		13.45	□□□□□ -0.26
CACNA1A-223	ENST00000636058	TRAK1	Q9UPV9	953 aa		13.45	□□□□□ -0.26
CACNA1A-223	ENST00000636058	SLC26A8	Q96RN1	970 aa		13.44	□□□□□ -0.26
CACNA1A-223	ENST00000636058	TECPR2	O15040	1411 aa		13.44	□□□□□ -0.26
CACNA1A-223	ENST00000636058	ABCC11	Q96J66	1382 aa		13.44	□□□□□ -0.26
CACNA1A-223	ENST00000636058	SBNO2	Q9Y2G9	1366 aa		13.44	□□□□□ -0.26
CACNA1A-223	ENST00000636058	QRICH2	Q9H0J4	1663 aa		13.44	□□□□□ -0.26
CACNA1A-223	ENST00000636058	CPS1	P31327	1500 aa		13.43	□□□□□ -0.26
CACNA1A-223	ENST00000636058	PIK3R4	Q99570	1358 aa		13.43	□□□□□ -0.26
CACNA1A-223	ENST00000636058	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.42	□□□□□ -0.26
CACNA1A-223	ENST00000636058	NCKAP5L	Q9HCH0	1330 aa		13.42	□□□□□ -0.26
CACNA1A-223	ENST00000636058	C11orf95	C9JLR9	678 aa	Predicted RBP	13.42	□□□□□ -0.26
CACNA1A-223	ENST00000636058	HSPA2	P54652	639 aa		13.42	□□□□□ -0.26
CACNA1A-223	ENST00000636058	WASHC2A	Q641Q2	1341 aa		13.41	□□□□□ -0.26
CACNA1A-223	ENST00000636058	PTPRU	Q92729	1446 aa		13.41	□□□□□ -0.26
CACNA1A-223	ENST00000636058	STK26	Q9P289	416 aa		13.41	□□□□□ -0.26
CACNA1A-223	ENST00000636058	CCDC7	Q96M83	1385 aa		13.41	□□□□□ -0.26
CACNA1A-223	ENST00000636058	XRN1	Q8IZH2	1706 aa	Known RBP	13.41	□□□□□ -0.26
CACNA1A-223	ENST00000636058	STRC	Q7RTU9	1775 aa		13.4	□□□□□ -0.26
CACNA1A-223	ENST00000636058	SIRT1	Q96EB6	747 aa		13.4	□□□□□ -0.26
CACNA1A-223	ENST00000636058	KIF7	Q2M1P5	1343 aa		13.39	□□□□□ -0.27
CACNA1A-223	ENST00000636058	FAM135B	Q49AJ0	1406 aa		13.39	□□□□□ -0.27
CACNA1A-223	ENST00000636058	CHD2	O14647	1828 aa	Known RBP	13.39	□□□□□ -0.27
CACNA1A-223	ENST00000636058	SLC24A1	O60721	1099 aa		13.39	□□□□□ -0.27
CACNA1A-223	ENST00000636058	DISP3	Q9P2K9	1392 aa		13.39	□□□□□ -0.27
CACNA1A-223	ENST00000636058	PTCH1	Q13635	1447 aa		13.39	□□□□□ -0.27
CACNA1A-223	ENST00000636058	TMF1	P82094	1093 aa		13.38	□□□□□ -0.27
CACNA1A-223	ENST00000636058	PRAM1	Q96QH2	718 aa		13.38	□□□□□ -0.27
CACNA1A-223	ENST00000636058	ROBO2	Q9HCK4	1378 aa		13.37	□□□□□ -0.27
CACNA1A-223	ENST00000636058	NWD1	Q149M9	1564 aa		13.37	□□□□□ -0.27
CACNA1A-223	ENST00000636058	PLEKHH1	Q9ULM0	1364 aa		13.36	□□□□□ -0.27
CACNA1A-223	ENST00000636058	AMOTL2	Q9Y2J4	779 aa		13.36	□□□□□ -0.27
CACNA1A-223	ENST00000636058	TULP4	Q9NRJ4	1543 aa		13.35	□□□□□ -0.27
CACNA1A-223	ENST00000636058	POGK	Q9P215	609 aa		13.35	□□□□□ -0.27
CACNA1A-223	ENST00000636058	WAPL	Q7Z5K2	1190 aa		13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms