RNA–Protein interactions for RNA: ENST00000634451.2

LINC00339-206, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-206ENST00000634451 GCC2Q8IWJ2 1684 aa20.13■□□□□ 0.81
LINC00339-206ENST00000634451 ZFYVE9O95405 1425 aa20.11■□□□□ 0.81
LINC00339-206ENST00000634451 ANKRD50Q9ULJ7 1429 aa20.11■□□□□ 0.81
LINC00339-206ENST00000634451 POTEAQ6S8J7 498 aa20.1■□□□□ 0.81
LINC00339-206ENST00000634451 BCANQ96GW7 911 aa20.09■□□□□ 0.81
LINC00339-206ENST00000634451 NKTRP30414 1462 aaKnown RBP20.08■□□□□ 0.81
LINC00339-206ENST00000634451 NUTM2DQ5VT03 806 aaPredicted RBP20.08■□□□□ 0.81
LINC00339-206ENST00000634451 TMEM131LA2VDJ0 1609 aa20.08■□□□□ 0.8
LINC00339-206ENST00000634451 RIMS2Q9UQ26 1411 aa20.07■□□□□ 0.8
LINC00339-206ENST00000634451 SLC52A1Q9NWF4 448 aa20.06■□□□□ 0.8
LINC00339-206ENST00000634451 CHD2O14647 1828 aaKnown RBP20.06■□□□□ 0.8
LINC00339-206ENST00000634451 RPRD2Q5VT52 1461 aaKnown RBP20.05■□□□□ 0.8
LINC00339-206ENST00000634451 UNC13BO14795 1591 aa20.04■□□□□ 0.8
LINC00339-206ENST00000634451 E9PCH4 1651 aa20.04■□□□□ 0.8
LINC00339-206ENST00000634451 PLEKHG1Q9ULL1 1385 aa20.04■□□□□ 0.8
LINC00339-206ENST00000634451 SETD1AO15047 1707 aaKnown RBP20.03■□□□□ 0.8
LINC00339-206ENST00000634451 PHLPP1O60346 1717 aa20.03■□□□□ 0.8
LINC00339-206ENST00000634451 CHGAP10645 457 aaKnown RBP20.02■□□□□ 0.8
LINC00339-206ENST00000634451 MSH6P52701 1360 aa20.02■□□□□ 0.8
LINC00339-206ENST00000634451 ADAMTS13Q76LX8 1427 aa20.02■□□□□ 0.79
LINC00339-206ENST00000634451 PPP1R15AO75807 674 aaPredicted RBP20.01■□□□□ 0.79
LINC00339-206ENST00000634451 SLAIN2Q9P270 581 aa20■□□□□ 0.79
LINC00339-206ENST00000634451 COL16A1Q07092 1604 aaPredicted RBP19.98■□□□□ 0.79
LINC00339-206ENST00000634451 LRP6O75581 1613 aa19.97■□□□□ 0.79
LINC00339-206ENST00000634451 IQGAP3Q86VI3 1631 aa19.95■□□□□ 0.78
LINC00339-206ENST00000634451 PPARGC1BQ86YN6 1023 aaKnown RBP19.95■□□□□ 0.78
LINC00339-206ENST00000634451 PTPRUQ92729 1446 aa19.94■□□□□ 0.78
LINC00339-206ENST00000634451 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.94■□□□□ 0.78
LINC00339-206ENST00000634451 TBX22Q9Y458 520 aa19.94■□□□□ 0.78
LINC00339-206ENST00000634451 ITGAEP38570 1179 aa19.93■□□□□ 0.78
LINC00339-206ENST00000634451 JCADQ9P266 1359 aa19.93■□□□□ 0.78
LINC00339-206ENST00000634451 C14orf37Q86TY3 774 aa19.92■□□□□ 0.78
LINC00339-206ENST00000634451 NRXN3Q9Y4C0 1643 aa19.9■□□□□ 0.78
LINC00339-206ENST00000634451 NUP155O75694 1391 aa19.89■□□□□ 0.77
LINC00339-206ENST00000634451 ROCK1Q13464 1354 aa19.89■□□□□ 0.77
LINC00339-206ENST00000634451 DIP2AQ14689 1571 aa19.88■□□□□ 0.77
LINC00339-206ENST00000634451 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.87■□□□□ 0.77
LINC00339-206ENST00000634451 AHDC1Q5TGY3 1603 aaPredicted RBP19.87■□□□□ 0.77
LINC00339-206ENST00000634451 AMOTL2Q9Y2J4 779 aa19.86■□□□□ 0.77
LINC00339-206ENST00000634451 HDGFP51858 240 aaKnown RBP19.85■□□□□ 0.77
LINC00339-206ENST00000634451 TRPM2O94759 1503 aa19.85■□□□□ 0.77
LINC00339-206ENST00000634451 XRN1Q8IZH2 1706 aaKnown RBP19.85■□□□□ 0.77
LINC00339-206ENST00000634451 NCOA3Q9Y6Q9 1424 aa19.84■□□□□ 0.77
LINC00339-206ENST00000634451 BRINP3Q76B58 766 aa19.83■□□□□ 0.77
LINC00339-206ENST00000634451 C19orf44Q9H6X5 657 aa19.83■□□□□ 0.77
LINC00339-206ENST00000634451 SPHKAPQ2M3C7 1700 aa19.82■□□□□ 0.76
LINC00339-206ENST00000634451 SHPRHQ149N8 1683 aa19.82■□□□□ 0.76
LINC00339-206ENST00000634451 ATF3P18847 181 aa19.82■□□□□ 0.76
LINC00339-206ENST00000634451 METP08581 1390 aa19.82■□□□□ 0.76
LINC00339-206ENST00000634451 PIK3R4Q99570 1358 aa19.82■□□□□ 0.76
LINC00339-206ENST00000634451 CADPS2Q86UW7 1296 aa19.81■□□□□ 0.76
LINC00339-206ENST00000634451 SETBP1Q9Y6X0 1596 aa19.8■□□□□ 0.76
LINC00339-206ENST00000634451 DDX17Q92841 729 aaKnown RBP19.8■□□□□ 0.76
LINC00339-206ENST00000634451 TRIM52Q96A61 297 aa19.8■□□□□ 0.76
LINC00339-206ENST00000634451 NUTM2BA6NNL0 878 aaPredicted RBP19.79■□□□□ 0.76
LINC00339-206ENST00000634451 NUTM2EB1AL46 878 aaPredicted RBP19.79■□□□□ 0.76
LINC00339-206ENST00000634451 MEX3CQ5U5Q3 659 aaKnown RBP19.79■□□□□ 0.76
LINC00339-206ENST00000634451 NUTM2AQ8IVF1 878 aaPredicted RBP19.79■□□□□ 0.76
LINC00339-206ENST00000634451 ASXL1Q8IXJ9 1541 aa19.79■□□□□ 0.76
LINC00339-206ENST00000634451 CLTCL1P53675 1640 aa19.79■□□□□ 0.76
LINC00339-206ENST00000634451 SPATA31A6Q5VVP1 1343 aa19.78■□□□□ 0.76
LINC00339-206ENST00000634451 MST1RQ04912 1400 aa19.78■□□□□ 0.76
LINC00339-206ENST00000634451 ZNF326Q5BKZ1 582 aaKnown RBP19.76■□□□□ 0.75
LINC00339-206ENST00000634451 NEXMIFQ5QGS0 1516 aa19.76■□□□□ 0.75
LINC00339-206ENST00000634451 NALCNQ8IZF0 1738 aa19.75■□□□□ 0.75
LINC00339-206ENST00000634451 NHSL1Q5SYE7 1610 aa19.74■□□□□ 0.75
LINC00339-206ENST00000634451 DCCP43146 1447 aa19.72■□□□□ 0.75
LINC00339-206ENST00000634451 UPF1Q92900 1129 aaKnown RBP eCLIP19.71■□□□□ 0.75
LINC00339-206ENST00000634451 ADGRL3Q9HAR2 1447 aa19.7■□□□□ 0.74
LINC00339-206ENST00000634451 ZNF772Q68DY9 489 aaPredicted RBP19.7■□□□□ 0.74
LINC00339-206ENST00000634451 AFF2P51816 1311 aa19.7■□□□□ 0.74
LINC00339-206ENST00000634451 SETD5Q9C0A6 1442 aa19.69■□□□□ 0.74
LINC00339-206ENST00000634451 PNPLA6Q8IY17 1366 aa19.67■□□□□ 0.74
LINC00339-206ENST00000634451 NAIPQ13075 1403 aa19.67■□□□□ 0.74
LINC00339-206ENST00000634451 RXRBP28702 533 aa19.66■□□□□ 0.74
LINC00339-206ENST00000634451 ROBO2Q9HCK4 1378 aa19.65■□□□□ 0.74
LINC00339-206ENST00000634451 KIF1BO60333 1816 aa19.65■□□□□ 0.74
LINC00339-206ENST00000634451 C8orf37Q96NL8 207 aa19.64■□□□□ 0.73
LINC00339-206ENST00000634451 C1orf167Q5SNV9 1468 aa19.63■□□□□ 0.73
LINC00339-206ENST00000634451 RGS12O14924 1447 aa19.63■□□□□ 0.73
LINC00339-206ENST00000634451 ORAI2Q96SN7 254 aa19.62■□□□□ 0.73
LINC00339-206ENST00000634451 RRBP1Q9P2E9 1410 aaKnown RBP19.61■□□□□ 0.73
LINC00339-206ENST00000634451 ADAMTS2O95450 1211 aa19.6■□□□□ 0.73
LINC00339-206ENST00000634451 LRRC59Q96AG4 307 aaKnown RBP19.6■□□□□ 0.73
LINC00339-206ENST00000634451 PTCH1Q13635 1447 aa19.59■□□□□ 0.73
LINC00339-206ENST00000634451 CDK12Q9NYV4 1490 aaPredicted RBP19.58■□□□□ 0.72
LINC00339-206ENST00000634451 FOXD1Q16676 465 aa19.57■□□□□ 0.72
LINC00339-206ENST00000634451 LAMC1P11047 1609 aa19.57■□□□□ 0.72
LINC00339-206ENST00000634451 PPLO60437 1756 aa19.57■□□□□ 0.72
LINC00339-206ENST00000634451 QTRT2Q9H974 415 aaKnown RBP19.56■□□□□ 0.72
LINC00339-206ENST00000634451 SOS2Q07890 1332 aaPredicted RBP19.53■□□□□ 0.72
LINC00339-206ENST00000634451 NGLY1Q96IV0 654 aa19.52■□□□□ 0.72
LINC00339-206ENST00000634451 HFM1A2PYH4 1435 aa19.51■□□□□ 0.71
LINC00339-206ENST00000634451 RBM6P78332 1123 aaKnown RBP19.51■□□□□ 0.71
LINC00339-206ENST00000634451 XPCQ01831 940 aaPredicted RBP19.51■□□□□ 0.71
LINC00339-206ENST00000634451 PRAG1Q86YV5 1406 aa19.51■□□□□ 0.71
LINC00339-206ENST00000634451 VGFO15240 615 aaPredicted RBP19.5■□□□□ 0.71
LINC00339-206ENST00000634451 SLC4A1APQ9BWU0 796 aaKnown RBP19.5■□□□□ 0.71
LINC00339-206ENST00000634451 ADGRF5Q8IZF2 1346 aa19.5■□□□□ 0.71
LINC00339-206ENST00000634451 NUTM2FA1L443 756 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms