RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 TMEM2Q9UHN6 1383 aa21.15■□□□□ 0.98
LIMS3-206ENST00000631420 STAC3Q96MF2 364 aa21.14■□□□□ 0.98
LIMS3-206ENST00000631420 SENP3Q9H4L4 574 aaPredicted RBP21.14■□□□□ 0.98
LIMS3-206ENST00000631420 RIMS2Q9UQ26 1411 aa21.14■□□□□ 0.98
LIMS3-206ENST00000631420 NEXMIFQ5QGS0 1516 aa21.14■□□□□ 0.97
LIMS3-206ENST00000631420 VGFO15240 615 aaPredicted RBP21.14■□□□□ 0.97
LIMS3-206ENST00000631420 ZFYVE9O95405 1425 aa21.12■□□□□ 0.97
LIMS3-206ENST00000631420 LTKP29376 864 aa21.12■□□□□ 0.97
LIMS3-206ENST00000631420 PRAG1Q86YV5 1406 aa21.11■□□□□ 0.97
LIMS3-206ENST00000631420 TXNDC2Q86VQ3 553 aa21.1■□□□□ 0.97
LIMS3-206ENST00000631420 KDM5AP29375 1690 aaKnown RBP21.1■□□□□ 0.97
LIMS3-206ENST00000631420 MYOM2P54296 1465 aa21.1■□□□□ 0.97
LIMS3-206ENST00000631420 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.1■□□□□ 0.97
LIMS3-206ENST00000631420 HDGFP51858 240 aaKnown RBP21.09■□□□□ 0.97
LIMS3-206ENST00000631420 IFT172Q9UG01 1749 aa21.09■□□□□ 0.97
LIMS3-206ENST00000631420 PPLO60437 1756 aa21.08■□□□□ 0.97
LIMS3-206ENST00000631420 ARHGAP23Q9P227 1491 aa21.08■□□□□ 0.96
LIMS3-206ENST00000631420 NBPF1Q3BBV0 1214 aa21.07■□□□□ 0.96
LIMS3-206ENST00000631420 CFAP70Q5T0N1 1121 aa21.07■□□□□ 0.96
LIMS3-206ENST00000631420 NRXN1Q9ULB1 1477 aa21.07■□□□□ 0.96
LIMS3-206ENST00000631420 ZNF142P52746 1687 aaPredicted RBP21.07■□□□□ 0.96
LIMS3-206ENST00000631420 EID1Q9Y6B2 187 aa21.06■□□□□ 0.96
LIMS3-206ENST00000631420 SLIT1O75093 1534 aa21.06■□□□□ 0.96
LIMS3-206ENST00000631420 HSPA2P54652 639 aa21.06■□□□□ 0.96
LIMS3-206ENST00000631420 PIK3C2GO75747 1445 aa21.04■□□□□ 0.96
LIMS3-206ENST00000631420 ANKLE2Q86XL3 938 aa21.03■□□□□ 0.96
LIMS3-206ENST00000631420 C14orf93Q9H972 538 aaKnown RBP21.03■□□□□ 0.96
LIMS3-206ENST00000631420 BCANQ96GW7 911 aa21.02■□□□□ 0.95
LIMS3-206ENST00000631420 LMTK3Q96Q04 1460 aa21.01■□□□□ 0.95
LIMS3-206ENST00000631420 NCKAP5LQ9HCH0 1330 aa21■□□□□ 0.95
LIMS3-206ENST00000631420 SCAF11Q99590 1463 aaKnown RBP20.99■□□□□ 0.95
LIMS3-206ENST00000631420 TMEM132EQ6IEE7 984 aa20.99■□□□□ 0.95
LIMS3-206ENST00000631420 ROCK2O75116 1388 aaKnown RBP20.99■□□□□ 0.95
LIMS3-206ENST00000631420 PLEKHG1Q9ULL1 1385 aa20.99■□□□□ 0.95
LIMS3-206ENST00000631420 RALGAPBQ86X10 1494 aa20.99■□□□□ 0.95
LIMS3-206ENST00000631420 CARD11Q9BXL7 1154 aa20.97■□□□□ 0.95
LIMS3-206ENST00000631420 TRPM1Q7Z4N2 1603 aa20.97■□□□□ 0.95
LIMS3-206ENST00000631420 SLC26A8Q96RN1 970 aa20.96■□□□□ 0.95
LIMS3-206ENST00000631420 ADAMTS13Q76LX8 1427 aa20.94■□□□□ 0.94
LIMS3-206ENST00000631420 GPRASP1Q5JY77 1395 aa20.94■□□□□ 0.94
LIMS3-206ENST00000631420 ALKQ9UM73 1620 aa20.94■□□□□ 0.94
LIMS3-206ENST00000631420 HIRIP3Q9BW71 556 aaPredicted RBP20.93■□□□□ 0.94
LIMS3-206ENST00000631420 SETBP1Q9Y6X0 1596 aa20.92■□□□□ 0.94
LIMS3-206ENST00000631420 NRXN3Q9Y4C0 1643 aa20.92■□□□□ 0.94
LIMS3-206ENST00000631420 METP08581 1390 aa20.91■□□□□ 0.94
LIMS3-206ENST00000631420 TBX22Q9Y458 520 aa20.9■□□□□ 0.94
LIMS3-206ENST00000631420 NPHP4O75161 1426 aaPredicted RBP20.9■□□□□ 0.94
LIMS3-206ENST00000631420 KIAA1210Q9ULL0 1709 aa20.89■□□□□ 0.94
LIMS3-206ENST00000631420 HSPA5P11021 654 aaKnown RBP20.89■□□□□ 0.94
LIMS3-206ENST00000631420 ADGRB1O14514 1584 aa20.89■□□□□ 0.94
LIMS3-206ENST00000631420 MED14O60244 1454 aa20.89■□□□□ 0.93
LIMS3-206ENST00000631420 EIF4G2P78344 907 aaKnown RBP eCLIP20.89■□□□□ 0.93
LIMS3-206ENST00000631420 STK26Q9P289 416 aa20.89■□□□□ 0.93
LIMS3-206ENST00000631420 IQGAP1P46940 1657 aa20.88■□□□□ 0.93
LIMS3-206ENST00000631420 ASXL1Q8IXJ9 1541 aa20.88■□□□□ 0.93
LIMS3-206ENST00000631420 TRAK1Q9UPV9 953 aa20.88■□□□□ 0.93
LIMS3-206ENST00000631420 AEBP2Q6ZN18 517 aaPredicted RBP20.87■□□□□ 0.93
LIMS3-206ENST00000631420 USP47Q96K76 1375 aa20.87■□□□□ 0.93
LIMS3-206ENST00000631420 LAMC1P11047 1609 aa20.84■□□□□ 0.93
LIMS3-206ENST00000631420 YTHDC2Q9H6S0 1430 aaKnown RBP20.84■□□□□ 0.93
LIMS3-206ENST00000631420 ST20-MTHFSA0A0A6YYL1 179 aa20.84■□□□□ 0.93
LIMS3-206ENST00000631420 SETD1AO15047 1707 aaKnown RBP20.83■□□□□ 0.93
LIMS3-206ENST00000631420 POLR1AO95602 1720 aaPredicted RBP20.82■□□□□ 0.92
LIMS3-206ENST00000631420 PTPRUQ92729 1446 aa20.82■□□□□ 0.92
LIMS3-206ENST00000631420 LRPPRCP42704 1394 aaKnown RBP20.82■□□□□ 0.92
LIMS3-206ENST00000631420 AMOTL2Q9Y2J4 779 aa20.8■□□□□ 0.92
LIMS3-206ENST00000631420 STRCQ7RTU9 1775 aa20.8■□□□□ 0.92
LIMS3-206ENST00000631420 ABCC11Q96J66 1382 aa20.79■□□□□ 0.92
LIMS3-206ENST00000631420 DIP2AQ14689 1571 aa20.78■□□□□ 0.92
LIMS3-206ENST00000631420 ZNF316A6NFI3 1004 aaPredicted RBP20.76■□□□□ 0.91
LIMS3-206ENST00000631420 WAPLQ7Z5K2 1190 aa20.76■□□□□ 0.91
LIMS3-206ENST00000631420 PRAM1Q96QH2 718 aa20.76■□□□□ 0.91
LIMS3-206ENST00000631420 SAFB2Q14151 953 aaKnown RBP eCLIP20.76■□□□□ 0.91
LIMS3-206ENST00000631420 PIK3R4Q99570 1358 aa20.76■□□□□ 0.91
LIMS3-206ENST00000631420 KCNA6P17658 529 aa20.75■□□□□ 0.91
LIMS3-206ENST00000631420 TESK2Q96S53 571 aa20.75■□□□□ 0.91
LIMS3-206ENST00000631420 EIF3AQ14152 1382 aaKnown RBP20.74■□□□□ 0.91
LIMS3-206ENST00000631420 ROBO2Q9HCK4 1378 aa20.74■□□□□ 0.91
LIMS3-206ENST00000631420 POGKQ9P215 609 aa20.74■□□□□ 0.91
LIMS3-206ENST00000631420 CENPJQ9HC77 1338 aaPredicted RBP20.74■□□□□ 0.91
LIMS3-206ENST00000631420 PLEKHH1Q9ULM0 1364 aa20.73■□□□□ 0.91
LIMS3-206ENST00000631420 C11orf95C9JLR9 678 aaPredicted RBP20.73■□□□□ 0.91
LIMS3-206ENST00000631420 SIRT1Q96EB6 747 aa20.72■□□□□ 0.91
LIMS3-206ENST00000631420 TECPR2O15040 1411 aa20.72■□□□□ 0.91
LIMS3-206ENST00000631420 DMRT2Q9Y5R5 561 aa20.71■□□□□ 0.91
LIMS3-206ENST00000631420 DLC1Q96QB1 1528 aa20.7■□□□□ 0.9
LIMS3-206ENST00000631420 RBM33Q96EV2 1170 aaKnown RBP20.68■□□□□ 0.9
LIMS3-206ENST00000631420 ARHGEF28Q8N1W1 1705 aaKnown RBP20.68■□□□□ 0.9
LIMS3-206ENST00000631420 FAM135BQ49AJ0 1406 aa20.67■□□□□ 0.9
LIMS3-206ENST00000631420 MINK1Q8N4C8 1332 aaPredicted RBP20.67■□□□□ 0.9
LIMS3-206ENST00000631420 CHD2O14647 1828 aaKnown RBP20.66■□□□□ 0.9
LIMS3-206ENST00000631420 CPS1P31327 1500 aa20.66■□□□□ 0.9
LIMS3-206ENST00000631420 XRN1Q8IZH2 1706 aaKnown RBP20.65■□□□□ 0.9
LIMS3-206ENST00000631420 ZNF335Q9H4Z2 1342 aaPredicted RBP20.65■□□□□ 0.9
LIMS3-206ENST00000631420 TMF1P82094 1093 aa20.64■□□□□ 0.9
LIMS3-206ENST00000631420 PTCH1Q13635 1447 aa20.64■□□□□ 0.9
LIMS3-206ENST00000631420 KNDC1Q76NI1 1749 aa20.64■□□□□ 0.9
LIMS3-206ENST00000631420 DISP3Q9P2K9 1392 aa20.64■□□□□ 0.9
LIMS3-206ENST00000631420 WASHC2AQ641Q2 1341 aa20.64■□□□□ 0.89
LIMS3-206ENST00000631420 PROSER2Q86WR7 435 aaPredicted RBP20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms