RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 TXNDC2Q86VQ3 553 aa29.9■■■□□ 2.38
PTCD3-220ENST00000627371 ANKRD30BQ9BXX2 1392 aa29.88■■■□□ 2.37
PTCD3-220ENST00000627371 NEXMIFQ5QGS0 1516 aa29.84■■■□□ 2.37
PTCD3-220ENST00000627371 HDGFP51858 240 aaKnown RBP29.82■■■□□ 2.36
PTCD3-220ENST00000627371 SPATA31E1Q6ZUB1 1445 aa29.81■■■□□ 2.36
PTCD3-220ENST00000627371 ZNF326Q5BKZ1 582 aaKnown RBP29.81■■■□□ 2.36
PTCD3-220ENST00000627371 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.81■■■□□ 2.36
PTCD3-220ENST00000627371 PPLO60437 1756 aa29.81■■■□□ 2.36
PTCD3-220ENST00000627371 PCGF6Q9BYE7 350 aa29.79■■■□□ 2.36
PTCD3-220ENST00000627371 IFT172Q9UG01 1749 aa29.78■■■□□ 2.36
PTCD3-220ENST00000627371 PLEKHG1Q9ULL1 1385 aa29.77■■■□□ 2.36
PTCD3-220ENST00000627371 PPP1R15AO75807 674 aaPredicted RBP29.77■■■□□ 2.36
PTCD3-220ENST00000627371 DHX57Q6P158 1386 aaKnown RBP29.76■■■□□ 2.35
PTCD3-220ENST00000627371 RPGRIP1LQ68CZ1 1315 aa29.73■■■□□ 2.35
PTCD3-220ENST00000627371 NUTM2DQ5VT03 806 aaPredicted RBP29.73■■■□□ 2.35
PTCD3-220ENST00000627371 LTBP4Q8N2S1 1624 aa29.71■■■□□ 2.35
PTCD3-220ENST00000627371 NRXN3Q9Y4C0 1643 aa29.71■■■□□ 2.35
PTCD3-220ENST00000627371 DIP2AQ14689 1571 aa29.69■■■□□ 2.34
PTCD3-220ENST00000627371 SETBP1Q9Y6X0 1596 aa29.69■■■□□ 2.34
PTCD3-220ENST00000627371 ZNF335Q9H4Z2 1342 aaPredicted RBP29.68■■■□□ 2.34
PTCD3-220ENST00000627371 RGL3Q3MIN7 710 aa29.67■■■□□ 2.34
PTCD3-220ENST00000627371 STRCP1A6NGW2 1772 aa29.67■■■□□ 2.34
PTCD3-220ENST00000627371 BCANQ96GW7 911 aa29.66■■■□□ 2.34
PTCD3-220ENST00000627371 ADAMTS13Q76LX8 1427 aa29.65■■■□□ 2.34
PTCD3-220ENST00000627371 VGFO15240 615 aaPredicted RBP29.64■■■□□ 2.34
PTCD3-220ENST00000627371 SLC26A8Q96RN1 970 aa29.64■■■□□ 2.34
PTCD3-220ENST00000627371 SENP3Q9H4L4 574 aaPredicted RBP29.62■■■□□ 2.33
PTCD3-220ENST00000627371 CHD2O14647 1828 aaKnown RBP29.61■■■□□ 2.33
PTCD3-220ENST00000627371 CPS1P31327 1500 aa29.61■■■□□ 2.33
PTCD3-220ENST00000627371 SETD1AO15047 1707 aaKnown RBP29.59■■■□□ 2.33
PTCD3-220ENST00000627371 TBX22Q9Y458 520 aa29.59■■■□□ 2.33
PTCD3-220ENST00000627371 MYOM2P54296 1465 aa29.59■■■□□ 2.33
PTCD3-220ENST00000627371 NWD1Q149M9 1564 aa29.59■■■□□ 2.33
PTCD3-220ENST00000627371 ADGRF5Q8IZF2 1346 aa29.54■■■□□ 2.32
PTCD3-220ENST00000627371 NRXN1Q9ULB1 1477 aa29.54■■■□□ 2.32
PTCD3-220ENST00000627371 PIK3R4Q99570 1358 aa29.53■■■□□ 2.32
PTCD3-220ENST00000627371 ALKQ9UM73 1620 aa29.53■■■□□ 2.32
PTCD3-220ENST00000627371 PIK3C2GO75747 1445 aa29.52■■■□□ 2.32
PTCD3-220ENST00000627371 CERKQ8TCT0 537 aa29.51■■■□□ 2.31
PTCD3-220ENST00000627371 IQSEC2Q5JU85 1478 aa29.5■■■□□ 2.31
PTCD3-220ENST00000627371 KCNA6P17658 529 aa29.5■■■□□ 2.31
PTCD3-220ENST00000627371 NKTRP30414 1462 aaKnown RBP29.49■■■□□ 2.31
PTCD3-220ENST00000627371 SIN3AQ96ST3 1273 aa29.49■■■□□ 2.31
PTCD3-220ENST00000627371 LAMC1P11047 1609 aa29.49■■■□□ 2.31
PTCD3-220ENST00000627371 XRN1Q8IZH2 1706 aaKnown RBP29.48■■■□□ 2.31
PTCD3-220ENST00000627371 LRRC7Q96NW7 1537 aa29.47■■■□□ 2.31
PTCD3-220ENST00000627371 XIRP1Q702N8 1843 aaKnown RBP29.47■■■□□ 2.31
PTCD3-220ENST00000627371 DCAF11Q8TEB1 546 aa29.46■■■□□ 2.31
PTCD3-220ENST00000627371 STAC3Q96MF2 364 aa29.46■■■□□ 2.31
PTCD3-220ENST00000627371 METP08581 1390 aa29.46■■■□□ 2.31
PTCD3-220ENST00000627371 PTPRUQ92729 1446 aa29.45■■■□□ 2.3
PTCD3-220ENST00000627371 NEUROD1Q13562 356 aa29.42■■■□□ 2.3
PTCD3-220ENST00000627371 KDM2AQ9Y2K7 1162 aa29.4■■■□□ 2.3
PTCD3-220ENST00000627371 ASXL1Q8IXJ9 1541 aa29.4■■■□□ 2.3
PTCD3-220ENST00000627371 AMOTL2Q9Y2J4 779 aa29.38■■■□□ 2.29
PTCD3-220ENST00000627371 C14orf93Q9H972 538 aaKnown RBP29.36■■■□□ 2.29
PTCD3-220ENST00000627371 KNDC1Q76NI1 1749 aa29.35■■■□□ 2.29
PTCD3-220ENST00000627371 CLSPNQ9HAW4 1339 aa29.35■■■□□ 2.29
PTCD3-220ENST00000627371 PRAG1Q86YV5 1406 aa29.35■■■□□ 2.29
PTCD3-220ENST00000627371 L3MBTL2Q969R5 705 aa29.34■■■□□ 2.29
PTCD3-220ENST00000627371 TMEM94Q12767 1356 aa29.34■■■□□ 2.29
PTCD3-220ENST00000627371 KIAA1210Q9ULL0 1709 aa29.34■■■□□ 2.29
PTCD3-220ENST00000627371 PROSER2Q86WR7 435 aaPredicted RBP29.33■■■□□ 2.29
PTCD3-220ENST00000627371 CFAP70Q5T0N1 1121 aa29.32■■■□□ 2.28
PTCD3-220ENST00000627371 PTCH1Q13635 1447 aa29.31■■■□□ 2.28
PTCD3-220ENST00000627371 ADGRB1O14514 1584 aa29.3■■■□□ 2.28
PTCD3-220ENST00000627371 NCOA3Q9Y6Q9 1424 aa29.28■■■□□ 2.28
PTCD3-220ENST00000627371 TONSLQ96HA7 1378 aa29.28■■■□□ 2.28
PTCD3-220ENST00000627371 TECPR2O15040 1411 aa29.28■■■□□ 2.28
PTCD3-220ENST00000627371 LRPPRCP42704 1394 aaKnown RBP29.27■■■□□ 2.28
PTCD3-220ENST00000627371 YTHDC2Q9H6S0 1430 aaKnown RBP29.27■■■□□ 2.28
PTCD3-220ENST00000627371 TMEM132EQ6IEE7 984 aa29.26■■■□□ 2.27
PTCD3-220ENST00000627371 RBM33Q96EV2 1170 aaKnown RBP29.25■■■□□ 2.27
PTCD3-220ENST00000627371 CCER1Q8TC90 406 aaPredicted RBP29.24■■■□□ 2.27
PTCD3-220ENST00000627371 ROBO2Q9HCK4 1378 aa29.24■■■□□ 2.27
PTCD3-220ENST00000627371 FBXO41Q8TF61 875 aa29.23■■■□□ 2.27
PTCD3-220ENST00000627371 ABCC11Q96J66 1382 aa29.23■■■□□ 2.27
PTCD3-220ENST00000627371 TRPM1Q7Z4N2 1603 aa29.22■■■□□ 2.27
PTCD3-220ENST00000627371 NALCNQ8IZF0 1738 aa29.22■■■□□ 2.27
PTCD3-220ENST00000627371 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.21■■■□□ 2.27
PTCD3-220ENST00000627371 MSH6P52701 1360 aa29.2■■■□□ 2.26
PTCD3-220ENST00000627371 STK26Q9P289 416 aa29.19■■■□□ 2.26
PTCD3-220ENST00000627371 UBAP1LF5GYI3 381 aa29.18■■■□□ 2.26
PTCD3-220ENST00000627371 DLC1Q96QB1 1528 aa29.18■■■□□ 2.26
PTCD3-220ENST00000627371 TOM1O60784 492 aa29.16■■■□□ 2.26
PTCD3-220ENST00000627371 FAM135BQ49AJ0 1406 aa29.15■■■□□ 2.26
PTCD3-220ENST00000627371 ADGRL3Q9HAR2 1447 aa29.15■■■□□ 2.26
PTCD3-220ENST00000627371 C14orf37Q86TY3 774 aa29.15■■■□□ 2.26
PTCD3-220ENST00000627371 ARHGEF28Q8N1W1 1705 aaKnown RBP29.14■■■□□ 2.26
PTCD3-220ENST00000627371 DCCP43146 1447 aa29.12■■■□□ 2.25
PTCD3-220ENST00000627371 SIRT1Q96EB6 747 aa29.12■■■□□ 2.25
PTCD3-220ENST00000627371 C19orf44Q9H6X5 657 aa29.12■■■□□ 2.25
PTCD3-220ENST00000627371 NBPF1Q3BBV0 1214 aa29.1■■■□□ 2.25
PTCD3-220ENST00000627371 NBPF8Q3BBV2 869 aa29.09■■■□□ 2.25
PTCD3-220ENST00000627371 TIMELESSQ9UNS1 1208 aa29.09■■■□□ 2.25
PTCD3-220ENST00000627371 PLEKHH1Q9ULM0 1364 aa29.09■■■□□ 2.25
PTCD3-220ENST00000627371 WAPLQ7Z5K2 1190 aa29.08■■■□□ 2.25
PTCD3-220ENST00000627371 TRAK1Q9UPV9 953 aa29.07■■■□□ 2.24
PTCD3-220ENST00000627371 CDC42BPGQ6DT37 1551 aa29.06■■■□□ 2.24
PTCD3-220ENST00000627371 CADPS2Q86UW7 1296 aa29.06■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms