RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 MSH6P52701 1360 aa22.98■■□□□ 1.27
PNKP-218ENST00000625299 PHLPP1O60346 1717 aa22.97■■□□□ 1.27
PNKP-218ENST00000625299 MYO5BQ9ULV0 1848 aa22.94■■□□□ 1.26
PNKP-218ENST00000625299 SETD1AO15047 1707 aaKnown RBP22.94■■□□□ 1.26
PNKP-218ENST00000625299 SLC52A1Q9NWF4 448 aa22.94■■□□□ 1.26
PNKP-218ENST00000625299 PPP1R15AO75807 674 aaPredicted RBP22.93■■□□□ 1.26
PNKP-218ENST00000625299 SLAIN2Q9P270 581 aa22.92■■□□□ 1.26
PNKP-218ENST00000625299 GCC2Q8IWJ2 1684 aa22.92■■□□□ 1.26
PNKP-218ENST00000625299 JCADQ9P266 1359 aa22.89■■□□□ 1.26
PNKP-218ENST00000625299 CHD2O14647 1828 aaKnown RBP22.89■■□□□ 1.26
PNKP-218ENST00000625299 PLEKHG1Q9ULL1 1385 aa22.89■■□□□ 1.25
PNKP-218ENST00000625299 ADGRL2O95490 1459 aa22.88■■□□□ 1.25
PNKP-218ENST00000625299 ZFYVE9O95405 1425 aa22.88■■□□□ 1.25
PNKP-218ENST00000625299 RIMS2Q9UQ26 1411 aa22.88■■□□□ 1.25
PNKP-218ENST00000625299 RPRD2Q5VT52 1461 aaKnown RBP22.87■■□□□ 1.25
PNKP-218ENST00000625299 FAM50AQ14320 339 aaKnown RBP22.87■■□□□ 1.25
PNKP-218ENST00000625299 C14orf37Q86TY3 774 aa22.87■■□□□ 1.25
PNKP-218ENST00000625299 ANKRD50Q9ULJ7 1429 aa22.86■■□□□ 1.25
PNKP-218ENST00000625299 CHGAP10645 457 aaKnown RBP22.86■■□□□ 1.25
PNKP-218ENST00000625299 TMEM131LA2VDJ0 1609 aa22.84■■□□□ 1.25
PNKP-218ENST00000625299 COL16A1Q07092 1604 aaPredicted RBP22.84■■□□□ 1.25
PNKP-218ENST00000625299 HDGFP51858 240 aaKnown RBP22.84■■□□□ 1.25
PNKP-218ENST00000625299 MEX3CQ5U5Q3 659 aaKnown RBP22.82■■□□□ 1.24
PNKP-218ENST00000625299 NUTM2DQ5VT03 806 aaPredicted RBP22.82■■□□□ 1.24
PNKP-218ENST00000625299 LRP6O75581 1613 aa22.79■■□□□ 1.24
PNKP-218ENST00000625299 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.78■■□□□ 1.24
PNKP-218ENST00000625299 TBX22Q9Y458 520 aa22.78■■□□□ 1.24
PNKP-218ENST00000625299 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.77■■□□□ 1.24
PNKP-218ENST00000625299 SPATA31A6Q5VVP1 1343 aa22.76■■□□□ 1.23
PNKP-218ENST00000625299 UNC13BO14795 1591 aa22.76■■□□□ 1.23
PNKP-218ENST00000625299 ADAMTS13Q76LX8 1427 aa22.75■■□□□ 1.23
PNKP-218ENST00000625299 NCOA3Q9Y6Q9 1424 aa22.75■■□□□ 1.23
PNKP-218ENST00000625299 E9PCH4 1651 aa22.75■■□□□ 1.23
PNKP-218ENST00000625299 ATF3P18847 181 aa22.75■■□□□ 1.23
PNKP-218ENST00000625299 TRIM52Q96A61 297 aa22.75■■□□□ 1.23
PNKP-218ENST00000625299 DIP2AQ14689 1571 aa22.75■■□□□ 1.23
PNKP-218ENST00000625299 CADPS2Q86UW7 1296 aa22.74■■□□□ 1.23
PNKP-218ENST00000625299 AHDC1Q5TGY3 1603 aaPredicted RBP22.74■■□□□ 1.23
PNKP-218ENST00000625299 ZNF772Q68DY9 489 aaPredicted RBP22.73■■□□□ 1.23
PNKP-218ENST00000625299 SHPRHQ149N8 1683 aa22.73■■□□□ 1.23
PNKP-218ENST00000625299 C19orf44Q9H6X5 657 aa22.72■■□□□ 1.23
PNKP-218ENST00000625299 TRPM2O94759 1503 aa22.7■■□□□ 1.22
PNKP-218ENST00000625299 PIK3R4Q99570 1358 aa22.69■■□□□ 1.22
PNKP-218ENST00000625299 NUTM2BA6NNL0 878 aaPredicted RBP22.69■■□□□ 1.22
PNKP-218ENST00000625299 NUTM2EB1AL46 878 aaPredicted RBP22.69■■□□□ 1.22
PNKP-218ENST00000625299 NUTM2AQ8IVF1 878 aaPredicted RBP22.69■■□□□ 1.22
PNKP-218ENST00000625299 AMOTL2Q9Y2J4 779 aa22.68■■□□□ 1.22
PNKP-218ENST00000625299 IQGAP3Q86VI3 1631 aa22.68■■□□□ 1.22
PNKP-218ENST00000625299 BRINP3Q76B58 766 aa22.66■■□□□ 1.22
PNKP-218ENST00000625299 UPF1Q92900 1129 aaKnown RBP eCLIP22.66■■□□□ 1.22
PNKP-218ENST00000625299 PTPRUQ92729 1446 aa22.65■■□□□ 1.22
PNKP-218ENST00000625299 RXRBP28702 533 aa22.64■■□□□ 1.21
PNKP-218ENST00000625299 NUP155O75694 1391 aa22.62■■□□□ 1.21
PNKP-218ENST00000625299 ASXL1Q8IXJ9 1541 aa22.62■■□□□ 1.21
PNKP-218ENST00000625299 XRN1Q8IZH2 1706 aaKnown RBP22.6■■□□□ 1.21
PNKP-218ENST00000625299 DCCP43146 1447 aa22.59■■□□□ 1.21
PNKP-218ENST00000625299 ITGAEP38570 1179 aa22.59■■□□□ 1.21
PNKP-218ENST00000625299 NRXN3Q9Y4C0 1643 aa22.59■■□□□ 1.21
PNKP-218ENST00000625299 ROCK1Q13464 1354 aa22.59■■□□□ 1.21
PNKP-218ENST00000625299 AFF2P51816 1311 aa22.58■■□□□ 1.21
PNKP-218ENST00000625299 ZNF326Q5BKZ1 582 aaKnown RBP22.57■■□□□ 1.2
PNKP-218ENST00000625299 NHSL1Q5SYE7 1610 aa22.57■■□□□ 1.2
PNKP-218ENST00000625299 MST1RQ04912 1400 aa22.57■■□□□ 1.2
PNKP-218ENST00000625299 SETBP1Q9Y6X0 1596 aa22.55■■□□□ 1.2
PNKP-218ENST00000625299 SPHKAPQ2M3C7 1700 aa22.55■■□□□ 1.2
PNKP-218ENST00000625299 SETD5Q9C0A6 1442 aa22.54■■□□□ 1.2
PNKP-218ENST00000625299 CDK12Q9NYV4 1490 aaPredicted RBP22.54■■□□□ 1.2
PNKP-218ENST00000625299 DDX17Q92841 729 aaKnown RBP22.53■■□□□ 1.2
PNKP-218ENST00000625299 C8orf37Q96NL8 207 aa22.53■■□□□ 1.2
PNKP-218ENST00000625299 METP08581 1390 aa22.52■■□□□ 1.2
PNKP-218ENST00000625299 LRRC59Q96AG4 307 aaKnown RBP22.51■■□□□ 1.19
PNKP-218ENST00000625299 NALCNQ8IZF0 1738 aa22.5■■□□□ 1.19
PNKP-218ENST00000625299 ADGRL3Q9HAR2 1447 aa22.49■■□□□ 1.19
PNKP-218ENST00000625299 RGS12O14924 1447 aa22.48■■□□□ 1.19
PNKP-218ENST00000625299 PNPLA6Q8IY17 1366 aa22.48■■□□□ 1.19
PNKP-218ENST00000625299 QTRT2Q9H974 415 aaKnown RBP22.46■■□□□ 1.19
PNKP-218ENST00000625299 ADAMTS2O95450 1211 aa22.45■■□□□ 1.18
PNKP-218ENST00000625299 CLTCL1P53675 1640 aa22.45■■□□□ 1.18
PNKP-218ENST00000625299 RBM6P78332 1123 aaKnown RBP22.44■■□□□ 1.18
PNKP-218ENST00000625299 NEXMIFQ5QGS0 1516 aa22.44■■□□□ 1.18
PNKP-218ENST00000625299 NGLY1Q96IV0 654 aa22.42■■□□□ 1.18
PNKP-218ENST00000625299 PPARGC1BQ86YN6 1023 aaKnown RBP22.41■■□□□ 1.18
PNKP-218ENST00000625299 C1orf167Q5SNV9 1468 aa22.41■■□□□ 1.18
PNKP-218ENST00000625299 KIF1BO60333 1816 aa22.41■■□□□ 1.18
PNKP-218ENST00000625299 ORAI2Q96SN7 254 aa22.36■■□□□ 1.17
PNKP-218ENST00000625299 PTCH1Q13635 1447 aa22.35■■□□□ 1.17
PNKP-218ENST00000625299 USP21Q9UK80 565 aa22.34■■□□□ 1.17
PNKP-218ENST00000625299 LAMC1P11047 1609 aa22.34■■□□□ 1.17
PNKP-218ENST00000625299 ROBO2Q9HCK4 1378 aa22.34■■□□□ 1.17
PNKP-218ENST00000625299 ATAD2Q6PL18 1390 aa22.33■■□□□ 1.17
PNKP-218ENST00000625299 SOS2Q07890 1332 aaPredicted RBP22.31■■□□□ 1.16
PNKP-218ENST00000625299 TRPC5Q9UL62 973 aaPredicted RBP22.3■■□□□ 1.16
PNKP-218ENST00000625299 VGFO15240 615 aaPredicted RBP22.29■■□□□ 1.16
PNKP-218ENST00000625299 SRCAPQ6ZRS2 3230 aa22.29■■□□□ 1.16
PNKP-218ENST00000625299 COL22A1Q8NFW1 1626 aaPredicted RBP22.26■■□□□ 1.15
PNKP-218ENST00000625299 HFM1A2PYH4 1435 aa22.25■■□□□ 1.15
PNKP-218ENST00000625299 ATRNO75882 1429 aa22.24■■□□□ 1.15
PNKP-218ENST00000625299 ESCO1Q5FWF5 840 aa22.24■■□□□ 1.15
PNKP-218ENST00000625299 FNBP4Q8N3X1 1017 aaPredicted RBP22.24■■□□□ 1.15
PNKP-218ENST00000625299 NAIPQ13075 1403 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms