RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 MYOM2P54296 1465 aa25.42■■□□□ 1.66
PTCHD3-202ENST00000622555 PRAG1Q86YV5 1406 aa25.42■■□□□ 1.66
PTCHD3-202ENST00000622555 KDM4FA0A1W2PPD8 638 aa25.42■■□□□ 1.66
PTCHD3-202ENST00000622555 CEP170BQ9Y4F5 1589 aaPredicted RBP25.39■■□□□ 1.65
PTCHD3-202ENST00000622555 ZNF142P52746 1687 aaPredicted RBP25.37■■□□□ 1.65
PTCHD3-202ENST00000622555 TRPM1Q7Z4N2 1603 aa25.36■■□□□ 1.65
PTCHD3-202ENST00000622555 NUTM2DQ5VT03 806 aaPredicted RBP25.36■■□□□ 1.65
PTCHD3-202ENST00000622555 ADGRF5Q8IZF2 1346 aa25.36■■□□□ 1.65
PTCHD3-202ENST00000622555 RIMS2Q9UQ26 1411 aa25.35■■□□□ 1.65
PTCHD3-202ENST00000622555 VGFO15240 615 aaPredicted RBP25.34■■□□□ 1.65
PTCHD3-202ENST00000622555 RALGAPBQ86X10 1494 aa25.34■■□□□ 1.65
PTCHD3-202ENST00000622555 NRXN1Q9ULB1 1477 aa25.34■■□□□ 1.65
PTCHD3-202ENST00000622555 TMEM2Q9UHN6 1383 aa25.32■■□□□ 1.64
PTCHD3-202ENST00000622555 ZFYVE9O95405 1425 aa25.32■■□□□ 1.64
PTCHD3-202ENST00000622555 THEMISQ8N1K5 641 aaPredicted RBP25.3■■□□□ 1.64
PTCHD3-202ENST00000622555 KIAA1210Q9ULL0 1709 aa25.29■■□□□ 1.64
PTCHD3-202ENST00000622555 PIK3C2GO75747 1445 aa25.29■■□□□ 1.64
PTCHD3-202ENST00000622555 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.29■■□□□ 1.64
PTCHD3-202ENST00000622555 HDGFP51858 240 aaKnown RBP25.28■■□□□ 1.64
PTCHD3-202ENST00000622555 ROCK2O75116 1388 aaKnown RBP25.28■■□□□ 1.64
PTCHD3-202ENST00000622555 SLIT1O75093 1534 aa25.27■■□□□ 1.64
PTCHD3-202ENST00000622555 ARHGAP23Q9P227 1491 aa25.26■■□□□ 1.63
PTCHD3-202ENST00000622555 NBPF1Q3BBV0 1214 aa25.24■■□□□ 1.63
PTCHD3-202ENST00000622555 CFAP70Q5T0N1 1121 aa25.23■■□□□ 1.63
PTCHD3-202ENST00000622555 LAMC1P11047 1609 aa25.23■■□□□ 1.63
PTCHD3-202ENST00000622555 CARD11Q9BXL7 1154 aa25.23■■□□□ 1.63
PTCHD3-202ENST00000622555 SENP3Q9H4L4 574 aaPredicted RBP25.23■■□□□ 1.63
PTCHD3-202ENST00000622555 EID1Q9Y6B2 187 aa25.22■■□□□ 1.63
PTCHD3-202ENST00000622555 TXNDC2Q86VQ3 553 aa25.21■■□□□ 1.63
PTCHD3-202ENST00000622555 GPRASP1Q5JY77 1395 aa25.21■■□□□ 1.63
PTCHD3-202ENST00000622555 C14orf93Q9H972 538 aaKnown RBP25.2■■□□□ 1.63
PTCHD3-202ENST00000622555 LTKP29376 864 aa25.2■■□□□ 1.62
PTCHD3-202ENST00000622555 SCAF11Q99590 1463 aaKnown RBP25.17■■□□□ 1.62
PTCHD3-202ENST00000622555 IQGAP1P46940 1657 aa25.17■■□□□ 1.62
PTCHD3-202ENST00000622555 EIF4G2P78344 907 aaKnown RBP eCLIP25.17■■□□□ 1.62
PTCHD3-202ENST00000622555 SETBP1Q9Y6X0 1596 aa25.17■■□□□ 1.62
PTCHD3-202ENST00000622555 ALKQ9UM73 1620 aa25.16■■□□□ 1.62
PTCHD3-202ENST00000622555 NRXN3Q9Y4C0 1643 aa25.16■■□□□ 1.62
PTCHD3-202ENST00000622555 USP47Q96K76 1375 aa25.15■■□□□ 1.62
PTCHD3-202ENST00000622555 PLEKHG1Q9ULL1 1385 aa25.15■■□□□ 1.62
PTCHD3-202ENST00000622555 BCANQ96GW7 911 aa25.15■■□□□ 1.62
PTCHD3-202ENST00000622555 HSPA5P11021 654 aaKnown RBP25.14■■□□□ 1.61
PTCHD3-202ENST00000622555 SETD1AO15047 1707 aaKnown RBP25.13■■□□□ 1.61
PTCHD3-202ENST00000622555 ADGRB1O14514 1584 aa25.12■■□□□ 1.61
PTCHD3-202ENST00000622555 ZNF316A6NFI3 1004 aaPredicted RBP25.12■■□□□ 1.61
PTCHD3-202ENST00000622555 ANKLE2Q86XL3 938 aa25.12■■□□□ 1.61
PTCHD3-202ENST00000622555 HIRIP3Q9BW71 556 aaPredicted RBP25.12■■□□□ 1.61
PTCHD3-202ENST00000622555 POLR1AO95602 1720 aaPredicted RBP25.11■■□□□ 1.61
PTCHD3-202ENST00000622555 TMEM132EQ6IEE7 984 aa25.11■■□□□ 1.61
PTCHD3-202ENST00000622555 ASXL1Q8IXJ9 1541 aa25.1■■□□□ 1.61
PTCHD3-202ENST00000622555 LMTK3Q96Q04 1460 aa25.08■■□□□ 1.61
PTCHD3-202ENST00000622555 ADAMTS13Q76LX8 1427 aa25.07■■□□□ 1.6
PTCHD3-202ENST00000622555 HSPA2P54652 639 aa25.03■■□□□ 1.6
PTCHD3-202ENST00000622555 EIF3AQ14152 1382 aaKnown RBP25.03■■□□□ 1.6
PTCHD3-202ENST00000622555 DIP2AQ14689 1571 aa25.03■■□□□ 1.6
PTCHD3-202ENST00000622555 ST20-MTHFSA0A0A6YYL1 179 aa25.03■■□□□ 1.6
PTCHD3-202ENST00000622555 MED14O60244 1454 aa25.02■■□□□ 1.6
PTCHD3-202ENST00000622555 SLC26A8Q96RN1 970 aa25.02■■□□□ 1.6
PTCHD3-202ENST00000622555 YTHDC2Q9H6S0 1430 aaKnown RBP25.02■■□□□ 1.6
PTCHD3-202ENST00000622555 METP08581 1390 aa25.02■■□□□ 1.6
PTCHD3-202ENST00000622555 NCKAP5LQ9HCH0 1330 aa25.01■■□□□ 1.59
PTCHD3-202ENST00000622555 TRAK1Q9UPV9 953 aa25.01■■□□□ 1.59
PTCHD3-202ENST00000622555 NPHP4O75161 1426 aaPredicted RBP25■■□□□ 1.59
PTCHD3-202ENST00000622555 ARHGEF28Q8N1W1 1705 aaKnown RBP25■■□□□ 1.59
PTCHD3-202ENST00000622555 STK26Q9P289 416 aa25■■□□□ 1.59
PTCHD3-202ENST00000622555 TBX22Q9Y458 520 aa24.99■■□□□ 1.59
PTCHD3-202ENST00000622555 LRPPRCP42704 1394 aaKnown RBP24.97■■□□□ 1.59
PTCHD3-202ENST00000622555 KNDC1Q76NI1 1749 aa24.94■■□□□ 1.58
PTCHD3-202ENST00000622555 QRICH2Q9H0J4 1663 aa24.93■■□□□ 1.58
PTCHD3-202ENST00000622555 CENPJQ9HC77 1338 aaPredicted RBP24.92■■□□□ 1.58
PTCHD3-202ENST00000622555 ABCC11Q96J66 1382 aa24.92■■□□□ 1.58
PTCHD3-202ENST00000622555 STRCQ7RTU9 1775 aa24.92■■□□□ 1.58
PTCHD3-202ENST00000622555 DLC1Q96QB1 1528 aa24.92■■□□□ 1.58
PTCHD3-202ENST00000622555 TESK2Q96S53 571 aa24.91■■□□□ 1.58
PTCHD3-202ENST00000622555 PTPRUQ92729 1446 aa24.89■■□□□ 1.58
PTCHD3-202ENST00000622555 PIK3R4Q99570 1358 aa24.89■■□□□ 1.57
PTCHD3-202ENST00000622555 TECPR2O15040 1411 aa24.89■■□□□ 1.57
PTCHD3-202ENST00000622555 CPS1P31327 1500 aa24.89■■□□□ 1.57
PTCHD3-202ENST00000622555 CHD2O14647 1828 aaKnown RBP24.87■■□□□ 1.57
PTCHD3-202ENST00000622555 C11orf95C9JLR9 678 aaPredicted RBP24.87■■□□□ 1.57
PTCHD3-202ENST00000622555 PRAM1Q96QH2 718 aa24.87■■□□□ 1.57
PTCHD3-202ENST00000622555 POGKQ9P215 609 aa24.87■■□□□ 1.57
PTCHD3-202ENST00000622555 XRN1Q8IZH2 1706 aaKnown RBP24.86■■□□□ 1.57
PTCHD3-202ENST00000622555 AMOTL2Q9Y2J4 779 aa24.86■■□□□ 1.57
PTCHD3-202ENST00000622555 SAFB2Q14151 953 aaKnown RBP eCLIP24.85■■□□□ 1.57
PTCHD3-202ENST00000622555 SBNO2Q9Y2G9 1366 aa24.84■■□□□ 1.57
PTCHD3-202ENST00000622555 WASHC2AQ641Q2 1341 aa24.84■■□□□ 1.57
PTCHD3-202ENST00000622555 TMF1P82094 1093 aa24.84■■□□□ 1.57
PTCHD3-202ENST00000622555 CCDC7Q96M83 1385 aa24.84■■□□□ 1.57
PTCHD3-202ENST00000622555 DISP3Q9P2K9 1392 aa24.83■■□□□ 1.57
PTCHD3-202ENST00000622555 KIF7Q2M1P5 1343 aa24.83■■□□□ 1.57
PTCHD3-202ENST00000622555 FAM135BQ49AJ0 1406 aa24.83■■□□□ 1.56
PTCHD3-202ENST00000622555 ROBO2Q9HCK4 1378 aa24.82■■□□□ 1.56
PTCHD3-202ENST00000622555 WAPLQ7Z5K2 1190 aa24.82■■□□□ 1.56
PTCHD3-202ENST00000622555 SIRT1Q96EB6 747 aa24.82■■□□□ 1.56
PTCHD3-202ENST00000622555 PLEKHH1Q9ULM0 1364 aa24.82■■□□□ 1.56
PTCHD3-202ENST00000622555 SLC24A1O60721 1099 aa24.81■■□□□ 1.56
PTCHD3-202ENST00000622555 POLR3GLQ9BT43 218 aa24.81■■□□□ 1.56
PTCHD3-202ENST00000622555 PTCH1Q13635 1447 aa24.8■■□□□ 1.56
PTCHD3-202ENST00000622555 KCNA6P17658 529 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms