RNA–Protein interactions for RNA: ENST00000621990.4

PDPN-212, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 2,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-212ENST00000621990 ABCA6Q8N139 1617 aa12.7□□□□□ -0.38
PDPN-212ENST00000621990 KIF3BO15066 747 aa12.7□□□□□ -0.38
PDPN-212ENST00000621990 MLH3Q9UHC1 1453 aa12.7□□□□□ -0.38
PDPN-212ENST00000621990 POGZQ7Z3K3 1410 aa12.69□□□□□ -0.38
PDPN-212ENST00000621990 FRMPD1Q5SYB0 1578 aa12.69□□□□□ -0.38
PDPN-212ENST00000621990 MROH2AA6NES4 1674 aa12.69□□□□□ -0.38
PDPN-212ENST00000621990 UGGT1Q9NYU2 1555 aa12.68□□□□□ -0.38
PDPN-212ENST00000621990 EIF3AQ14152 1382 aaKnown RBP12.68□□□□□ -0.38
PDPN-212ENST00000621990 MYO3AQ8NEV4 1616 aa12.68□□□□□ -0.38
PDPN-212ENST00000621990 ADGRB3O60242 1522 aa12.68□□□□□ -0.38
PDPN-212ENST00000621990 PDE3BQ13370 1112 aa12.68□□□□□ -0.38
PDPN-212ENST00000621990 HECW2Q9P2P5 1572 aa12.67□□□□□ -0.38
PDPN-212ENST00000621990 KDM5AP29375 1690 aaKnown RBP12.67□□□□□ -0.38
PDPN-212ENST00000621990 CDCA8Q53HL2 280 aa12.67□□□□□ -0.38
PDPN-212ENST00000621990 NPC1L1Q9UHC9 1359 aa12.66□□□□□ -0.38
PDPN-212ENST00000621990 B4GALNT3Q6L9W6 998 aa12.66□□□□□ -0.38
PDPN-212ENST00000621990 SETBP1Q9Y6X0 1596 aa12.65□□□□□ -0.38
PDPN-212ENST00000621990 CD109Q6YHK3 1445 aa12.65□□□□□ -0.38
PDPN-212ENST00000621990 CC2D1BQ5T0F9 858 aaKnown RBP12.65□□□□□ -0.38
PDPN-212ENST00000621990 ASXL1Q8IXJ9 1541 aa12.65□□□□□ -0.38
PDPN-212ENST00000621990 OSCARQ8IYS5 282 aa12.65□□□□□ -0.38
PDPN-212ENST00000621990 FANCIQ9NVI1 1328 aa12.64□□□□□ -0.39
PDPN-212ENST00000621990 AMER1Q5JTC6 1135 aaPredicted RBP12.64□□□□□ -0.39
PDPN-212ENST00000621990 PPLO60437 1756 aa12.64□□□□□ -0.39
PDPN-212ENST00000621990 SBNO2Q9Y2G9 1366 aa12.63□□□□□ -0.39
PDPN-212ENST00000621990 ERVK-7P63135 1459 aa12.62□□□□□ -0.39
PDPN-212ENST00000621990 NEO1Q92859 1461 aa12.62□□□□□ -0.39
PDPN-212ENST00000621990 PIK3C2GO75747 1445 aa12.62□□□□□ -0.39
PDPN-212ENST00000621990 NPATQ14207 1427 aa12.62□□□□□ -0.39
PDPN-212ENST00000621990 NPM1P06748 294 aaKnown RBP eCLIP12.61□□□□□ -0.39
PDPN-212ENST00000621990 ABCC3O15438 1527 aa12.61□□□□□ -0.39
PDPN-212ENST00000621990 ANP32EQ9BTT0 268 aa12.61□□□□□ -0.39
PDPN-212ENST00000621990 ADGRF5Q8IZF2 1346 aa12.61□□□□□ -0.39
PDPN-212ENST00000621990 KNSTRNQ9Y448 316 aa12.61□□□□□ -0.39
PDPN-212ENST00000621990 ZC3H13Q5T200 1668 aaKnown RBP12.6□□□□□ -0.39
PDPN-212ENST00000621990 MYT1LQ9UL68 1186 aa12.6□□□□□ -0.39
PDPN-212ENST00000621990 PIK3C2BO00750 1634 aa12.6□□□□□ -0.39
PDPN-212ENST00000621990 CAMSAP1Q5T5Y3 1602 aa12.6□□□□□ -0.39
PDPN-212ENST00000621990 PPP2R1AP30153 589 aa12.6□□□□□ -0.39
PDPN-212ENST00000621990 RRP1P56182 461 aaKnown RBP12.6□□□□□ -0.39
PDPN-212ENST00000621990 ADGRB1O14514 1584 aa12.59□□□□□ -0.39
PDPN-212ENST00000621990 CFAP70Q5T0N1 1121 aa12.59□□□□□ -0.39
PDPN-212ENST00000621990 PHF23Q9BUL5 403 aaPredicted RBP12.59□□□□□ -0.39
PDPN-212ENST00000621990 RCAN3Q9UKA8 241 aa12.59□□□□□ -0.39
PDPN-212ENST00000621990 SENP3-EIF4A1A0A087X0R7 540 aa12.58□□□□□ -0.4
PDPN-212ENST00000621990 DIP2CQ9Y2E4 1556 aa12.58□□□□□ -0.4
PDPN-212ENST00000621990 RICTORQ6R327 1708 aa12.57□□□□□ -0.4
PDPN-212ENST00000621990 SIGLEC1Q9BZZ2 1709 aa12.57□□□□□ -0.4
PDPN-212ENST00000621990 NOS1P29475 1434 aa12.57□□□□□ -0.4
PDPN-212ENST00000621990 CCDC136Q96JN2 1154 aa12.56□□□□□ -0.4
PDPN-212ENST00000621990 RPGRIP1LQ68CZ1 1315 aa12.56□□□□□ -0.4
PDPN-212ENST00000621990 QRICH2Q9H0J4 1663 aa12.55□□□□□ -0.4
PDPN-212ENST00000621990 ADAMTS8Q9UP79 889 aa12.55□□□□□ -0.4
PDPN-212ENST00000621990 ARHGAP31Q2M1Z3 1444 aa12.55□□□□□ -0.4
PDPN-212ENST00000621990 CDCA7LQ96GN5 454 aa12.54□□□□□ -0.4
PDPN-212ENST00000621990 ZNF521Q96K83 1311 aa12.54□□□□□ -0.4
PDPN-212ENST00000621990 MSH5O43196 834 aa12.53□□□□□ -0.4
PDPN-212ENST00000621990 C14orf93Q9H972 538 aaKnown RBP12.53□□□□□ -0.4
PDPN-212ENST00000621990 USP32Q8NFA0 1604 aa12.53□□□□□ -0.4
PDPN-212ENST00000621990 GLI2P10070 1586 aa12.52□□□□□ -0.4
PDPN-212ENST00000621990 NEXMIFQ5QGS0 1516 aa12.52□□□□□ -0.4
PDPN-212ENST00000621990 CFAP65Q6ZU64 1925 aaKnown RBP12.52□□□□□ -0.41
PDPN-212ENST00000621990 SALL2Q9Y467 1007 aaPredicted RBP12.52□□□□□ -0.41
PDPN-212ENST00000621990 PLEKHH1Q9ULM0 1364 aa12.51□□□□□ -0.41
PDPN-212ENST00000621990 CENPJQ9HC77 1338 aaPredicted RBP12.51□□□□□ -0.41
PDPN-212ENST00000621990 CARD14Q9BXL6 1004 aa12.51□□□□□ -0.41
PDPN-212ENST00000621990 WDR43Q15061 677 aaKnown RBP eCLIP12.51□□□□□ -0.41
PDPN-212ENST00000621990 ARHGEF28Q8N1W1 1705 aaKnown RBP12.5□□□□□ -0.41
PDPN-212ENST00000621990 GGT6Q6P531 493 aa12.5□□□□□ -0.41
PDPN-212ENST00000621990 EXOC6Q8TAG9 804 aa12.49□□□□□ -0.41
PDPN-212ENST00000621990 ZFYVE9O95405 1425 aa12.49□□□□□ -0.41
PDPN-212ENST00000621990 PUS7Q96PZ0 661 aaKnown RBP12.48□□□□□ -0.41
PDPN-212ENST00000621990 RAPGEF3O95398 923 aa12.47□□□□□ -0.41
PDPN-212ENST00000621990 DUSP27Q5VZP5 1158 aa12.47□□□□□ -0.41
PDPN-212ENST00000621990 POLR3AO14802 1390 aaPredicted RBP12.47□□□□□ -0.41
PDPN-212ENST00000621990 SHPRHQ149N8 1683 aa12.47□□□□□ -0.41
PDPN-212ENST00000621990 TRMT2AQ8IZ69 625 aaKnown RBP12.46□□□□□ -0.41
PDPN-212ENST00000621990 PREX1Q8TCU6 1659 aa12.46□□□□□ -0.41
PDPN-212ENST00000621990 NGEFQ8N5V2 710 aa12.46□□□□□ -0.42
PDPN-212ENST00000621990 TMEM131LA2VDJ0 1609 aa12.45□□□□□ -0.42
PDPN-212ENST00000621990 TULP4Q9NRJ4 1543 aa12.45□□□□□ -0.42
PDPN-212ENST00000621990 YEATS2Q9ULM3 1422 aa12.45□□□□□ -0.42
PDPN-212ENST00000621990 CHGAP10645 457 aaKnown RBP12.45□□□□□ -0.42
PDPN-212ENST00000621990 GOLGA2Q08379 1002 aa12.45□□□□□ -0.42
PDPN-212ENST00000621990 NSD3Q9BZ95 1437 aa12.44□□□□□ -0.42
PDPN-212ENST00000621990 TRAK1Q9UPV9 953 aa12.44□□□□□ -0.42
PDPN-212ENST00000621990 VGFO15240 615 aaPredicted RBP12.44□□□□□ -0.42
PDPN-212ENST00000621990 SLFN5Q08AF3 891 aa12.44□□□□□ -0.42
PDPN-212ENST00000621990 MYO5BQ9ULV0 1848 aa12.43□□□□□ -0.42
PDPN-212ENST00000621990 REREQ9P2R6 1566 aa12.43□□□□□ -0.42
PDPN-212ENST00000621990 SLC52A1Q9NWF4 448 aa12.43□□□□□ -0.42
PDPN-212ENST00000621990 TCERG1O14776 1098 aaKnown RBP12.41□□□□□ -0.42
PDPN-212ENST00000621990 PLIN1O60240 522 aa12.41□□□□□ -0.42
PDPN-212ENST00000621990 TMEM132EQ6IEE7 984 aa12.41□□□□□ -0.42
PDPN-212ENST00000621990 NKTRP30414 1462 aaKnown RBP12.41□□□□□ -0.42
PDPN-212ENST00000621990 DIP2BQ9P265 1576 aa12.4□□□□□ -0.42
PDPN-212ENST00000621990 CRBNQ96SW2 442 aa12.4□□□□□ -0.42
PDPN-212ENST00000621990 CLTCQ00610 1675 aaKnown RBP12.4□□□□□ -0.42
PDPN-212ENST00000621990 NSD2O96028 1365 aa12.4□□□□□ -0.42
PDPN-212ENST00000621990 ANKRD36BQ8N2N9 1353 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms