RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 C14orf37Q86TY3 774 aa8.89□□□□□ -0.99
NEDD9-216ENST00000620854 PANK2Q9BZ23 570 aa8.89□□□□□ -0.99
NEDD9-216ENST00000620854 RSPH6AQ9H0K4 717 aa8.89□□□□□ -0.99
NEDD9-216ENST00000620854 FAM43AQ8N2R8 423 aa8.88□□□□□ -0.99
NEDD9-216ENST00000620854 GPATCH8Q9UKJ3 1502 aaKnown RBP8.88□□□□□ -0.99
NEDD9-216ENST00000620854 DNMT1P26358 1616 aaKnown RBP8.88□□□□□ -0.99
NEDD9-216ENST00000620854 C9orf84Q5VXU9 1444 aa8.87□□□□□ -0.99
NEDD9-216ENST00000620854 UHRF1BP1Q6BDS2 1440 aa8.86□□□□□ -0.99
NEDD9-216ENST00000620854 MFAP1P55081 439 aaKnown RBP8.86□□□□□ -0.99
NEDD9-216ENST00000620854 USP19O94966 1318 aa8.86□□□□□ -0.99
NEDD9-216ENST00000620854 PLEKHH2Q8IVE3 1493 aa8.86□□□□□ -0.99
NEDD9-216ENST00000620854 KIF14Q15058 1648 aa8.85□□□□□ -0.99
NEDD9-216ENST00000620854 POLR1AO95602 1720 aaPredicted RBP8.85□□□□□ -0.99
NEDD9-216ENST00000620854 CENPJQ9HC77 1338 aaPredicted RBP8.85□□□□□ -0.99
NEDD9-216ENST00000620854 ERBINQ96RT1 1412 aa8.85□□□□□ -0.99
NEDD9-216ENST00000620854 AMER1Q5JTC6 1135 aaPredicted RBP8.85□□□□□ -0.99
NEDD9-216ENST00000620854 TBC1D2Q9BYX2 928 aa8.85□□□□□ -0.99
NEDD9-216ENST00000620854 GOLGA6L3A6NEY3 463 aa8.84□□□□□ -0.99
NEDD9-216ENST00000620854 PLEKHG5O94827 1062 aa8.84□□□□□ -0.99
NEDD9-216ENST00000620854 XRCC6P12956 609 aaKnown RBP eCLIP8.84□□□□□ -0.99
NEDD9-216ENST00000620854 FOXD4L1Q9NU39 408 aa8.84□□□□□ -0.99
NEDD9-216ENST00000620854 PCDHB15Q9Y5E8 787 aa8.84□□□□□ -0.99
NEDD9-216ENST00000620854 VSIG10Q8N0Z9 540 aa8.84□□□□□ -0.99
NEDD9-216ENST00000620854 PNNQ9H307 717 aaKnown RBP8.84□□□□□ -0.99
NEDD9-216ENST00000620854 RLBP1P12271 317 aa8.84□□□□□ -0.99
NEDD9-216ENST00000620854 PRAG1Q86YV5 1406 aa8.84□□□□□ -1
NEDD9-216ENST00000620854 TPRNQ4KMQ1 711 aa8.83□□□□□ -1
NEDD9-216ENST00000620854 PDZRN3Q9UPQ7 1066 aa8.83□□□□□ -1
NEDD9-216ENST00000620854 TARBP1Q13395 1621 aaKnown RBP8.83□□□□□ -1
NEDD9-216ENST00000620854 E9PSI1 815 aa8.83□□□□□ -1
NEDD9-216ENST00000620854 GLIPR1L2Q4G1C9 344 aa8.83□□□□□ -1
NEDD9-216ENST00000620854 STK26Q9P289 416 aa8.83□□□□□ -1
NEDD9-216ENST00000620854 PBRM1Q86U86 1689 aa8.83□□□□□ -1
NEDD9-216ENST00000620854 BLMP54132 1417 aaPredicted RBP8.83□□□□□ -1
NEDD9-216ENST00000620854 SCAPERQ9BY12 1400 aa8.83□□□□□ -1
NEDD9-216ENST00000620854 SAFB2Q14151 953 aaKnown RBP eCLIP8.83□□□□□ -1
NEDD9-216ENST00000620854 L1TD1Q5T7N2 865 aaKnown RBP8.83□□□□□ -1
NEDD9-216ENST00000620854 NUP160Q12769 1436 aa8.82□□□□□ -1
NEDD9-216ENST00000620854 NCLP19338 710 aaKnown RBP8.81□□□□□ -1
NEDD9-216ENST00000620854 DISP1Q96F81 1524 aa8.81□□□□□ -1
NEDD9-216ENST00000620854 CGNL1Q0VF96 1302 aa8.81□□□□□ -1
NEDD9-216ENST00000620854 ZNF521Q96K83 1311 aa8.81□□□□□ -1
NEDD9-216ENST00000620854 RAPGEF3O95398 923 aa8.81□□□□□ -1
NEDD9-216ENST00000620854 WWC1Q8IX03 1113 aa8.81□□□□□ -1
NEDD9-216ENST00000620854 TRIM44Q96DX7 344 aaPredicted RBP8.81□□□□□ -1
NEDD9-216ENST00000620854 NUTM2DQ5VT03 806 aaPredicted RBP8.81□□□□□ -1
NEDD9-216ENST00000620854 SRPK2P78362 688 aaKnown RBP8.8□□□□□ -1
NEDD9-216ENST00000620854 MAPK8IP3Q9UPT6 1336 aa8.8□□□□□ -1
NEDD9-216ENST00000620854 KIAA0556O60303 1618 aa8.8□□□□□ -1
NEDD9-216ENST00000620854 RAPGEF6Q8TEU7 1601 aa8.8□□□□□ -1
NEDD9-216ENST00000620854 ZMYM4Q5VZL5 1548 aa8.8□□□□□ -1
NEDD9-216ENST00000620854 TRAK2O60296 914 aa8.8□□□□□ -1
NEDD9-216ENST00000620854 MCM4P33991 863 aa8.8□□□□□ -1
NEDD9-216ENST00000620854 FTSJ3Q8IY81 847 aaKnown RBP8.8□□□□□ -1
NEDD9-216ENST00000620854 CD109Q6YHK3 1445 aa8.8□□□□□ -1
NEDD9-216ENST00000620854 ATP10BO94823 1461 aa8.8□□□□□ -1
NEDD9-216ENST00000620854 MAGI2Q86UL8 1455 aa8.8□□□□□ -1
NEDD9-216ENST00000620854 TCP11L2Q8N4U5 519 aa8.79□□□□□ -1
NEDD9-216ENST00000620854 HSP90AA2PQ14568 343 aaPredicted RBP8.79□□□□□ -1
NEDD9-216ENST00000620854 CFAP70Q5T0N1 1121 aa8.79□□□□□ -1
NEDD9-216ENST00000620854 ANTXR1Q9H6X2 564 aa8.79□□□□□ -1
NEDD9-216ENST00000620854 EID1Q9Y6B2 187 aa8.79□□□□□ -1
NEDD9-216ENST00000620854 PDE3AQ14432 1141 aa8.78□□□□□ -1
NEDD9-216ENST00000620854 TBC1D32Q96NH3 1257 aa8.78□□□□□ -1
NEDD9-216ENST00000620854 C22orf23Q9BZE7 217 aa8.78□□□□□ -1
NEDD9-216ENST00000620854 MYH16Q9H6N6 1097 aa8.78□□□□□ -1
NEDD9-216ENST00000620854 NKTRP30414 1462 aaKnown RBP8.78□□□□□ -1
NEDD9-216ENST00000620854 MORC1Q86VD1 984 aa8.78□□□□□ -1
NEDD9-216ENST00000620854 CFAP53Q96M91 514 aa8.78□□□□□ -1
NEDD9-216ENST00000620854 CCDC141Q6ZP82 1450 aa8.78□□□□□ -1
NEDD9-216ENST00000620854 COL17A1Q9UMD9 1497 aaPredicted RBP8.78□□□□□ -1
NEDD9-216ENST00000620854 VGFO15240 615 aaPredicted RBP8.78□□□□□ -1
NEDD9-216ENST00000620854 A2MP01023 1474 aa8.78□□□□□ -1
NEDD9-216ENST00000620854 RARSP54136 660 aaKnown RBP8.78□□□□□ -1
NEDD9-216ENST00000620854 PMFBP1Q8TBY8 1022 aa8.78□□□□□ -1
NEDD9-216ENST00000620854 TSR2Q969E8 191 aaKnown RBP8.78□□□□□ -1
NEDD9-216ENST00000620854 CARD14Q9BXL6 1004 aa8.78□□□□□ -1
NEDD9-216ENST00000620854 RWDD1Q9H446 243 aaPredicted RBP8.77□□□□□ -1
NEDD9-216ENST00000620854 EIF3AQ14152 1382 aaKnown RBP8.77□□□□□ -1.01
NEDD9-216ENST00000620854 TRMT2AQ8IZ69 625 aaKnown RBP8.77□□□□□ -1.01
NEDD9-216ENST00000620854 ARHGEF12Q9NZN5 1544 aa8.77□□□□□ -1.01
NEDD9-216ENST00000620854 ITPRIPQ8IWB1 547 aa8.77□□□□□ -1.01
NEDD9-216ENST00000620854 ARID3AQ99856 593 aa8.77□□□□□ -1.01
NEDD9-216ENST00000620854 U2AF1L5P0DN76 240 aaPredicted RBP8.76□□□□□ -1.01
NEDD9-216ENST00000620854 U2AF1Q01081 240 aaKnown RBP eCLIP8.76□□□□□ -1.011e-6■■□□□ 11.6
NEDD9-216ENST00000620854 SLC12A5Q9H2X9 1139 aa8.76□□□□□ -1.01
NEDD9-216ENST00000620854 ADGRL2O95490 1459 aa8.76□□□□□ -1.01
NEDD9-216ENST00000620854 PLA2R1Q13018 1463 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 ZBTB7CA1YPR0 619 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 HSCBQ8IWL3 235 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 TRAK1Q9UPV9 953 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 FAM135AQ9P2D6 1515 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 U2SURPO15042 1029 aaKnown RBP8.75□□□□□ -1.01
NEDD9-216ENST00000620854 ADGRL1O94910 1474 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 PKNOX2Q96KN3 472 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 LNPKQ9C0E8 428 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 ZMYND15Q9H091 742 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 CHMP5Q9NZZ3 219 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 MTHFSP49914 203 aa8.75□□□□□ -1.01
NEDD9-216ENST00000620854 SMC4Q9NTJ3 1288 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms