RNA–Protein interactions for RNA: ENST00000620709.4

CD40-207, Transcript of CD40 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD40, Length 1,522 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-207ENST00000620709 IQGAP3Q86VI3 1631 aa24.34■■□□□ 1.49
CD40-207ENST00000620709 ALKQ9UM73 1620 aa24.34■■□□□ 1.49
CD40-207ENST00000620709 HDGFP51858 240 aaKnown RBP24.32■■□□□ 1.48
CD40-207ENST00000620709 RIMS2Q9UQ26 1411 aa24.32■■□□□ 1.48
CD40-207ENST00000620709 KCNA6P17658 529 aa24.31■■□□□ 1.48
CD40-207ENST00000620709 NUTM2DQ5VT03 806 aaPredicted RBP24.31■■□□□ 1.48
CD40-207ENST00000620709 RBM33Q96EV2 1170 aaKnown RBP24.31■■□□□ 1.48
CD40-207ENST00000620709 TMEM131LA2VDJ0 1609 aa24.3■■□□□ 1.48
CD40-207ENST00000620709 PROSER2Q86WR7 435 aaPredicted RBP24.3■■□□□ 1.48
CD40-207ENST00000620709 XIRP1Q702N8 1843 aaKnown RBP24.3■■□□□ 1.48
CD40-207ENST00000620709 TMEM94Q12767 1356 aa24.28■■□□□ 1.48
CD40-207ENST00000620709 ZFYVE9O95405 1425 aa24.27■■□□□ 1.48
CD40-207ENST00000620709 TRIM26Q12899 539 aaPredicted RBP24.26■■□□□ 1.47
CD40-207ENST00000620709 PLEKHG1Q9ULL1 1385 aa24.26■■□□□ 1.47
CD40-207ENST00000620709 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.25■■□□□ 1.47
CD40-207ENST00000620709 RRBP1Q9P2E9 1410 aaKnown RBP24.25■■□□□ 1.47
CD40-207ENST00000620709 MED1Q15648 1581 aaPredicted RBP24.22■■□□□ 1.47
CD40-207ENST00000620709 SOCS7O14512 581 aa24.19■■□□□ 1.46
CD40-207ENST00000620709 NWD1Q149M9 1564 aa24.18■■□□□ 1.46
CD40-207ENST00000620709 NKTRP30414 1462 aaKnown RBP24.18■■□□□ 1.46
CD40-207ENST00000620709 ZNF326Q5BKZ1 582 aaKnown RBP24.18■■□□□ 1.46
CD40-207ENST00000620709 TRIM52Q96A61 297 aa24.18■■□□□ 1.46
CD40-207ENST00000620709 SPHKAPQ2M3C7 1700 aa24.17■■□□□ 1.46
CD40-207ENST00000620709 PHF23Q9BUL5 403 aaPredicted RBP24.17■■□□□ 1.46
CD40-207ENST00000620709 NAIPQ13075 1403 aa24.16■■□□□ 1.46
CD40-207ENST00000620709 TBX22Q9Y458 520 aa24.16■■□□□ 1.46
CD40-207ENST00000620709 CHD2O14647 1828 aaKnown RBP24.16■■□□□ 1.46
CD40-207ENST00000620709 PCGF6Q9BYE7 350 aa24.15■■□□□ 1.46
CD40-207ENST00000620709 MSH6P52701 1360 aa24.15■■□□□ 1.46
CD40-207ENST00000620709 C14orf37Q86TY3 774 aa24.15■■□□□ 1.46
CD40-207ENST00000620709 ADAMTS13Q76LX8 1427 aa24.11■■□□□ 1.45
CD40-207ENST00000620709 FAM135BQ49AJ0 1406 aa24.1■■□□□ 1.45
CD40-207ENST00000620709 ROBO1Q9Y6N7 1651 aa24.09■■□□□ 1.45
CD40-207ENST00000620709 DIP2AQ14689 1571 aa24.08■■□□□ 1.45
CD40-207ENST00000620709 SLAIN2Q9P270 581 aa24.06■■□□□ 1.44
CD40-207ENST00000620709 CLTCL1P53675 1640 aa24.06■■□□□ 1.44
CD40-207ENST00000620709 TRPM2O94759 1503 aa24.06■■□□□ 1.44
CD40-207ENST00000620709 HFM1A2PYH4 1435 aa24.06■■□□□ 1.44
CD40-207ENST00000620709 AMOTL2Q9Y2J4 779 aa24.05■■□□□ 1.44
CD40-207ENST00000620709 SLC4A1APQ9BWU0 796 aaKnown RBP24.05■■□□□ 1.44
CD40-207ENST00000620709 PIK3R4Q99570 1358 aa24.03■■□□□ 1.44
CD40-207ENST00000620709 KIF1BO60333 1816 aa24.02■■□□□ 1.44
CD40-207ENST00000620709 PTPRUQ92729 1446 aa24.01■■□□□ 1.43
CD40-207ENST00000620709 ATF3P18847 181 aa24■■□□□ 1.43
CD40-207ENST00000620709 NRXN3Q9Y4C0 1643 aa23.98■■□□□ 1.43
CD40-207ENST00000620709 NCOA3Q9Y6Q9 1424 aa23.98■■□□□ 1.43
CD40-207ENST00000620709 SETBP1Q9Y6X0 1596 aa23.97■■□□□ 1.43
CD40-207ENST00000620709 PHLPP1O60346 1717 aa23.97■■□□□ 1.43
CD40-207ENST00000620709 C19orf44Q9H6X5 657 aa23.97■■□□□ 1.43
CD40-207ENST00000620709 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.96■■□□□ 1.43
CD40-207ENST00000620709 NEXMIFQ5QGS0 1516 aa23.96■■□□□ 1.43
CD40-207ENST00000620709 FOXD1Q16676 465 aa23.96■■□□□ 1.43
CD40-207ENST00000620709 CADPS2Q86UW7 1296 aa23.96■■□□□ 1.43
CD40-207ENST00000620709 METP08581 1390 aa23.95■■□□□ 1.42
CD40-207ENST00000620709 VGFO15240 615 aaPredicted RBP23.9■■□□□ 1.42
CD40-207ENST00000620709 XRN1Q8IZH2 1706 aaKnown RBP23.9■■□□□ 1.42
CD40-207ENST00000620709 JCADQ9P266 1359 aa23.87■■□□□ 1.41
CD40-207ENST00000620709 RGS17Q9UGC6 210 aaPredicted RBP23.87■■□□□ 1.41
CD40-207ENST00000620709 MPHOSPH9Q99550 1183 aa23.85■■□□□ 1.41
CD40-207ENST00000620709 RPGRIP1LQ68CZ1 1315 aa23.85■■□□□ 1.41
CD40-207ENST00000620709 COL16A1Q07092 1604 aaPredicted RBP23.84■■□□□ 1.41
CD40-207ENST00000620709 RGL3Q3MIN7 710 aa23.84■■□□□ 1.41
CD40-207ENST00000620709 BRINP3Q76B58 766 aa23.83■■□□□ 1.41
CD40-207ENST00000620709 CCDC144AA2RUR9 1427 aa23.83■■□□□ 1.4
CD40-207ENST00000620709 DCCP43146 1447 aa23.81■■□□□ 1.4
CD40-207ENST00000620709 PPLO60437 1756 aa23.81■■□□□ 1.4
CD40-207ENST00000620709 MEX3CQ5U5Q3 659 aaKnown RBP23.79■■□□□ 1.4
CD40-207ENST00000620709 ADGRL3Q9HAR2 1447 aa23.79■■□□□ 1.4
CD40-207ENST00000620709 AHDC1Q5TGY3 1603 aaPredicted RBP23.79■■□□□ 1.4
CD40-207ENST00000620709 POTEAQ6S8J7 498 aa23.79■■□□□ 1.4
CD40-207ENST00000620709 MST1RQ04912 1400 aa23.78■■□□□ 1.4
CD40-207ENST00000620709 NALCNQ8IZF0 1738 aa23.78■■□□□ 1.4
CD40-207ENST00000620709 SETD1AO15047 1707 aaKnown RBP23.77■■□□□ 1.4
CD40-207ENST00000620709 ASXL1Q8IXJ9 1541 aa23.76■■□□□ 1.39
CD40-207ENST00000620709 SETD5Q9C0A6 1442 aa23.76■■□□□ 1.39
CD40-207ENST00000620709 ROBO2Q9HCK4 1378 aa23.75■■□□□ 1.39
CD40-207ENST00000620709 NUTM2BA6NNL0 878 aaPredicted RBP23.74■■□□□ 1.39
CD40-207ENST00000620709 NUTM2EB1AL46 878 aaPredicted RBP23.74■■□□□ 1.39
CD40-207ENST00000620709 NUTM2AQ8IVF1 878 aaPredicted RBP23.74■■□□□ 1.39
CD40-207ENST00000620709 ADGRF5Q8IZF2 1346 aa23.74■■□□□ 1.39
CD40-207ENST00000620709 DDX17Q92841 729 aaKnown RBP23.74■■□□□ 1.39
CD40-207ENST00000620709 SPATA31A6Q5VVP1 1343 aa23.73■■□□□ 1.39
CD40-207ENST00000620709 PTCH1Q13635 1447 aa23.72■■□□□ 1.39
CD40-207ENST00000620709 STK26Q9P289 416 aa23.72■■□□□ 1.39
CD40-207ENST00000620709 LRP6O75581 1613 aa23.71■■□□□ 1.39
CD40-207ENST00000620709 SHPRHQ149N8 1683 aa23.71■■□□□ 1.39
CD40-207ENST00000620709 SPATA31E1Q6ZUB1 1445 aa23.7■■□□□ 1.38
CD40-207ENST00000620709 ACIN1Q9UKV3 1341 aaKnown RBP23.68■■□□□ 1.38
CD40-207ENST00000620709 ANKRD30BQ9BXX2 1392 aa23.68■■□□□ 1.38
CD40-207ENST00000620709 NHSL1Q5SYE7 1610 aa23.67■■□□□ 1.38
CD40-207ENST00000620709 LRRC59Q96AG4 307 aaKnown RBP23.67■■□□□ 1.38
CD40-207ENST00000620709 RAB3GAP2Q9H2M9 1393 aa23.67■■□□□ 1.38
CD40-207ENST00000620709 C1orf167Q5SNV9 1468 aa23.67■■□□□ 1.38
CD40-207ENST00000620709 IFT172Q9UG01 1749 aa23.66■■□□□ 1.38
CD40-207ENST00000620709 TMEM132EQ6IEE7 984 aa23.65■■□□□ 1.38
CD40-207ENST00000620709 ORAI2Q96SN7 254 aa23.65■■□□□ 1.38
CD40-207ENST00000620709 WAPLQ7Z5K2 1190 aa23.63■■□□□ 1.37
CD40-207ENST00000620709 ZNF772Q68DY9 489 aaPredicted RBP23.62■■□□□ 1.37
CD40-207ENST00000620709 PRAG1Q86YV5 1406 aa23.61■■□□□ 1.37
CD40-207ENST00000620709 NUTM2FA1L443 756 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms