RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ZFYVE9O95405 1425 aa18.17■□□□□ 0.5
UPF3B-204ENST00000619445 PLEKHG1Q9ULL1 1385 aa18.17■□□□□ 0.5
UPF3B-204ENST00000619445 E9PCH4 1651 aa18.17■□□□□ 0.5
UPF3B-204ENST00000619445 TMEM131LA2VDJ0 1609 aa18.17■□□□□ 0.5
UPF3B-204ENST00000619445 NUP155O75694 1391 aa18.16■□□□□ 0.5
UPF3B-204ENST00000619445 MYO5BQ9ULV0 1848 aa18.16■□□□□ 0.5
UPF3B-204ENST00000619445 NWD1Q149M9 1564 aa18.16■□□□□ 0.5
UPF3B-204ENST00000619445 MED1Q15648 1581 aaPredicted RBP18.16■□□□□ 0.5
UPF3B-204ENST00000619445 SLC26A8Q96RN1 970 aa18.16■□□□□ 0.5
UPF3B-204ENST00000619445 RIMS2Q9UQ26 1411 aa18.15■□□□□ 0.5
UPF3B-204ENST00000619445 PROSER2Q86WR7 435 aaPredicted RBP18.15■□□□□ 0.5
UPF3B-204ENST00000619445 TMEM94Q12767 1356 aa18.14■□□□□ 0.49
UPF3B-204ENST00000619445 FAM135BQ49AJ0 1406 aa18.13■□□□□ 0.49
UPF3B-204ENST00000619445 ITGAEP38570 1179 aa18.12■□□□□ 0.49
UPF3B-204ENST00000619445 TBX22Q9Y458 520 aa18.12■□□□□ 0.49
UPF3B-204ENST00000619445 DIP2AQ14689 1571 aa18.11■□□□□ 0.49
UPF3B-204ENST00000619445 CHGAP10645 457 aaKnown RBP18.11■□□□□ 0.49
UPF3B-204ENST00000619445 CHD2O14647 1828 aaKnown RBP18.11■□□□□ 0.49
UPF3B-204ENST00000619445 MSH6P52701 1360 aa18.1■□□□□ 0.49
UPF3B-204ENST00000619445 PIK3R4Q99570 1358 aa18.1■□□□□ 0.49
UPF3B-204ENST00000619445 NCOA3Q9Y6Q9 1424 aa18.1■□□□□ 0.49
UPF3B-204ENST00000619445 PHF23Q9BUL5 403 aaPredicted RBP18.09■□□□□ 0.49
UPF3B-204ENST00000619445 RRBP1Q9P2E9 1410 aaKnown RBP18.09■□□□□ 0.49
UPF3B-204ENST00000619445 SPHKAPQ2M3C7 1700 aa18.06■□□□□ 0.48
UPF3B-204ENST00000619445 PPARGC1BQ86YN6 1023 aaKnown RBP18.04■□□□□ 0.48
UPF3B-204ENST00000619445 ROBO1Q9Y6N7 1651 aa18.03■□□□□ 0.48
UPF3B-204ENST00000619445 TRPM2O94759 1503 aa18.02■□□□□ 0.48
UPF3B-204ENST00000619445 ADAMTS13Q76LX8 1427 aa18.02■□□□□ 0.48
UPF3B-204ENST00000619445 SENP3Q9H4L4 574 aaPredicted RBP18.01■□□□□ 0.47
UPF3B-204ENST00000619445 SLAIN2Q9P270 581 aa18.01■□□□□ 0.47
UPF3B-204ENST00000619445 NAIPQ13075 1403 aa18■□□□□ 0.47
UPF3B-204ENST00000619445 C14orf37Q86TY3 774 aa17.99■□□□□ 0.47
UPF3B-204ENST00000619445 CADPS2Q86UW7 1296 aa17.99■□□□□ 0.47
UPF3B-204ENST00000619445 C19orf44Q9H6X5 657 aa17.98■□□□□ 0.47
UPF3B-204ENST00000619445 SETBP1Q9Y6X0 1596 aa17.98■□□□□ 0.47
UPF3B-204ENST00000619445 HFM1A2PYH4 1435 aa17.97■□□□□ 0.47
UPF3B-204ENST00000619445 ZNF326Q5BKZ1 582 aaKnown RBP17.97■□□□□ 0.47
UPF3B-204ENST00000619445 RBM33Q96EV2 1170 aaKnown RBP17.97■□□□□ 0.47
UPF3B-204ENST00000619445 KIF1BO60333 1816 aa17.96■□□□□ 0.47
UPF3B-204ENST00000619445 NUTM2DQ5VT03 806 aaPredicted RBP17.96■□□□□ 0.47
UPF3B-204ENST00000619445 ATF3P18847 181 aa17.95■□□□□ 0.46
UPF3B-204ENST00000619445 AMOTL2Q9Y2J4 779 aa17.94■□□□□ 0.46
UPF3B-204ENST00000619445 DCCP43146 1447 aa17.94■□□□□ 0.46
UPF3B-204ENST00000619445 PHLPP1O60346 1717 aa17.94■□□□□ 0.46
UPF3B-204ENST00000619445 CLTCL1P53675 1640 aa17.93■□□□□ 0.46
UPF3B-204ENST00000619445 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.92■□□□□ 0.46
UPF3B-204ENST00000619445 JCADQ9P266 1359 aa17.92■□□□□ 0.46
UPF3B-204ENST00000619445 TRIM52Q96A61 297 aa17.91■□□□□ 0.46
UPF3B-204ENST00000619445 NRXN3Q9Y4C0 1643 aa17.91■□□□□ 0.46
UPF3B-204ENST00000619445 XRN1Q8IZH2 1706 aaKnown RBP17.91■□□□□ 0.46
UPF3B-204ENST00000619445 ACIN1Q9UKV3 1341 aaKnown RBP17.91■□□□□ 0.46
UPF3B-204ENST00000619445 NEXMIFQ5QGS0 1516 aa17.9■□□□□ 0.46
UPF3B-204ENST00000619445 RPGRIP1LQ68CZ1 1315 aa17.89■□□□□ 0.45
UPF3B-204ENST00000619445 PTPRUQ92729 1446 aa17.89■□□□□ 0.45
UPF3B-204ENST00000619445 VGFO15240 615 aaPredicted RBP17.89■□□□□ 0.45
UPF3B-204ENST00000619445 SLC4A1APQ9BWU0 796 aaKnown RBP17.89■□□□□ 0.45
UPF3B-204ENST00000619445 AHDC1Q5TGY3 1603 aaPredicted RBP17.87■□□□□ 0.45
UPF3B-204ENST00000619445 COL16A1Q07092 1604 aaPredicted RBP17.86■□□□□ 0.45
UPF3B-204ENST00000619445 SPATA31A6Q5VVP1 1343 aa17.85■□□□□ 0.45
UPF3B-204ENST00000619445 METP08581 1390 aa17.84■□□□□ 0.45
UPF3B-204ENST00000619445 RGS17Q9UGC6 210 aaPredicted RBP17.84■□□□□ 0.45
UPF3B-204ENST00000619445 ADGRL3Q9HAR2 1447 aa17.82■□□□□ 0.44
UPF3B-204ENST00000619445 SHPRHQ149N8 1683 aa17.82■□□□□ 0.44
UPF3B-204ENST00000619445 PTCH1Q13635 1447 aa17.81■□□□□ 0.44
UPF3B-204ENST00000619445 PRAG1Q86YV5 1406 aa17.8■□□□□ 0.44
UPF3B-204ENST00000619445 BRINP3Q76B58 766 aa17.8■□□□□ 0.44
UPF3B-204ENST00000619445 PPLO60437 1756 aa17.79■□□□□ 0.44
UPF3B-204ENST00000619445 MST1RQ04912 1400 aa17.79■□□□□ 0.44
UPF3B-204ENST00000619445 ASXL1Q8IXJ9 1541 aa17.78■□□□□ 0.44
UPF3B-204ENST00000619445 CCDC144AA2RUR9 1427 aa17.78■□□□□ 0.44
UPF3B-204ENST00000619445 SETD1AO15047 1707 aaKnown RBP17.76■□□□□ 0.43
UPF3B-204ENST00000619445 NHSL1Q5SYE7 1610 aa17.76■□□□□ 0.43
UPF3B-204ENST00000619445 MEX3CQ5U5Q3 659 aaKnown RBP17.76■□□□□ 0.43
UPF3B-204ENST00000619445 SETD5Q9C0A6 1442 aa17.75■□□□□ 0.43
UPF3B-204ENST00000619445 NALCNQ8IZF0 1738 aa17.75■□□□□ 0.43
UPF3B-204ENST00000619445 ZNF772Q68DY9 489 aaPredicted RBP17.75■□□□□ 0.43
UPF3B-204ENST00000619445 POTEAQ6S8J7 498 aa17.75■□□□□ 0.43
UPF3B-204ENST00000619445 LRRC59Q96AG4 307 aaKnown RBP17.75■□□□□ 0.43
UPF3B-204ENST00000619445 ANKRD30BQ9BXX2 1392 aa17.75■□□□□ 0.43
UPF3B-204ENST00000619445 MPHOSPH9Q99550 1183 aa17.73■□□□□ 0.43
UPF3B-204ENST00000619445 LRP6O75581 1613 aa17.71■□□□□ 0.43
UPF3B-204ENST00000619445 ROBO2Q9HCK4 1378 aa17.7■□□□□ 0.42
UPF3B-204ENST00000619445 C1orf167Q5SNV9 1468 aa17.7■□□□□ 0.42
UPF3B-204ENST00000619445 SPATA31E1Q6ZUB1 1445 aa17.7■□□□□ 0.42
UPF3B-204ENST00000619445 LAMC1P11047 1609 aa17.69■□□□□ 0.42
UPF3B-204ENST00000619445 IFT172Q9UG01 1749 aa17.68■□□□□ 0.42
UPF3B-204ENST00000619445 FOXD1Q16676 465 aa17.67■□□□□ 0.42
UPF3B-204ENST00000619445 TECPR2O15040 1411 aa17.66■□□□□ 0.42
UPF3B-204ENST00000619445 RGL3Q3MIN7 710 aa17.66■□□□□ 0.42
UPF3B-204ENST00000619445 CDC42BPGQ6DT37 1551 aa17.66■□□□□ 0.42
UPF3B-204ENST00000619445 ADGRF5Q8IZF2 1346 aa17.64■□□□□ 0.41
UPF3B-204ENST00000619445 NUTM2BA6NNL0 878 aaPredicted RBP17.64■□□□□ 0.41
UPF3B-204ENST00000619445 NUTM2EB1AL46 878 aaPredicted RBP17.64■□□□□ 0.41
UPF3B-204ENST00000619445 NUTM2AQ8IVF1 878 aaPredicted RBP17.64■□□□□ 0.41
UPF3B-204ENST00000619445 LRPPRCP42704 1394 aaKnown RBP17.64■□□□□ 0.41
UPF3B-204ENST00000619445 PNPLA6Q8IY17 1366 aa17.64■□□□□ 0.41
UPF3B-204ENST00000619445 ABCC11Q96J66 1382 aa17.64■□□□□ 0.41
UPF3B-204ENST00000619445 PIK3C2GO75747 1445 aa17.63■□□□□ 0.41
UPF3B-204ENST00000619445 KNDC1Q76NI1 1749 aa17.63■□□□□ 0.41
UPF3B-204ENST00000619445 SOS2Q07890 1332 aaPredicted RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms