RNA–Protein interactions for RNA: ENST00000618464.1

SYNGR3-206, Transcript of synaptogyrin 3, human

TSL 1 (best) BASIC

Gene SYNGR3, Length 1,213 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNGR3-206	ENST00000618464	MED1	Q15648	1581 aa	Predicted RBP	33.41	■■■□□ 2.94
SYNGR3-206	ENST00000618464	MYO5B	Q9ULV0	1848 aa		33.41	■■■□□ 2.94
SYNGR3-206	ENST00000618464	XIRP1	Q702N8	1843 aa	Known RBP	33.4	■■■□□ 2.94
SYNGR3-206	ENST00000618464	CHGA	P10645	457 aa	Known RBP	33.4	■■■□□ 2.94
SYNGR3-206	ENST00000618464	SLC26A8	Q96RN1	970 aa		33.4	■■■□□ 2.94
SYNGR3-206	ENST00000618464	TMEM131L	A2VDJ0	1609 aa		33.38	■■■□□ 2.93
SYNGR3-206	ENST00000618464	KCNA6	P17658	529 aa		33.33	■■■□□ 2.93
SYNGR3-206	ENST00000618464	BCAN	Q96GW7	911 aa		33.33	■■■□□ 2.93
SYNGR3-206	ENST00000618464	RIMS2	Q9UQ26	1411 aa		33.33	■■■□□ 2.93
SYNGR3-206	ENST00000618464	ZFYVE9	O95405	1425 aa		33.32	■■■□□ 2.92
SYNGR3-206	ENST00000618464	HFM1	A2PYH4	1435 aa		33.3	■■■□□ 2.92
SYNGR3-206	ENST00000618464	PPP1R15A	O75807	674 aa	Predicted RBP	33.3	■■■□□ 2.92
SYNGR3-206	ENST00000618464	TMEM94	Q12767	1356 aa		33.3	■■■□□ 2.92
SYNGR3-206	ENST00000618464	RBM33	Q96EV2	1170 aa	Known RBP	33.28	■■■□□ 2.92
SYNGR3-206	ENST00000618464	SPHKAP	Q2M3C7	1700 aa		33.27	■■■□□ 2.92
SYNGR3-206	ENST00000618464	PROSER2	Q86WR7	435 aa	Predicted RBP	33.26	■■■□□ 2.91
SYNGR3-206	ENST00000618464	TRIM52	Q96A61	297 aa		33.26	■■■□□ 2.91
SYNGR3-206	ENST00000618464	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.25	■■■□□ 2.91
SYNGR3-206	ENST00000618464	HDGF	P51858	240 aa	Known RBP	33.24	■■■□□ 2.91
SYNGR3-206	ENST00000618464	PLEKHG1	Q9ULL1	1385 aa		33.23	■■■□□ 2.91
SYNGR3-206	ENST00000618464	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.2	■■■□□ 2.91
SYNGR3-206	ENST00000618464	NWD1	Q149M9	1564 aa		33.2	■■■□□ 2.91
SYNGR3-206	ENST00000618464	PHF23	Q9BUL5	403 aa	Predicted RBP	33.18	■■■□□ 2.9
SYNGR3-206	ENST00000618464	FAM135B	Q49AJ0	1406 aa		33.18	■■■□□ 2.9
SYNGR3-206	ENST00000618464	NKTR	P30414	1462 aa	Known RBP	33.17	■■■□□ 2.9
SYNGR3-206	ENST00000618464	CLTCL1	P53675	1640 aa		33.13	■■■□□ 2.89
SYNGR3-206	ENST00000618464	TRPM2	O94759	1503 aa		33.12	■■■□□ 2.89
SYNGR3-206	ENST00000618464	SLC4A1AP	Q9BWU0	796 aa	Known RBP	33.11	■■■□□ 2.89
SYNGR3-206	ENST00000618464	CHD2	O14647	1828 aa	Known RBP	33.11	■■■□□ 2.89
SYNGR3-206	ENST00000618464	ZNF326	Q5BKZ1	582 aa	Known RBP	33.1	■■■□□ 2.89
SYNGR3-206	ENST00000618464	TBX22	Q9Y458	520 aa		33.1	■■■□□ 2.89
SYNGR3-206	ENST00000618464	ROBO1	Q9Y6N7	1651 aa		33.07	■■■□□ 2.89
SYNGR3-206	ENST00000618464	ADAMTS13	Q76LX8	1427 aa		33.07	■■■□□ 2.88
SYNGR3-206	ENST00000618464	MSH6	P52701	1360 aa		33.07	■■■□□ 2.88
SYNGR3-206	ENST00000618464	DIP2A	Q14689	1571 aa		33.03	■■■□□ 2.88
SYNGR3-206	ENST00000618464	SLAIN2	Q9P270	581 aa		33.01	■■■□□ 2.87
SYNGR3-206	ENST00000618464	KIF1B	O60333	1816 aa		33	■■■□□ 2.87
SYNGR3-206	ENST00000618464	FOXD1	Q16676	465 aa		33	■■■□□ 2.87
SYNGR3-206	ENST00000618464	RGS17	Q9UGC6	210 aa	Predicted RBP	33	■■■□□ 2.87
SYNGR3-206	ENST00000618464	NEXMIF	Q5QGS0	1516 aa		32.97	■■■□□ 2.87
SYNGR3-206	ENST00000618464	NRXN3	Q9Y4C0	1643 aa		32.95	■■■□□ 2.86
SYNGR3-206	ENST00000618464	PIK3R4	Q99570	1358 aa		32.94	■■■□□ 2.86
SYNGR3-206	ENST00000618464	SETBP1	Q9Y6X0	1596 aa		32.93	■■■□□ 2.86
SYNGR3-206	ENST00000618464	NCOA3	Q9Y6Q9	1424 aa		32.93	■■■□□ 2.86
SYNGR3-206	ENST00000618464	C14orf37	Q86TY3	774 aa		32.91	■■■□□ 2.86
SYNGR3-206	ENST00000618464	MPHOSPH9	Q99550	1183 aa		32.91	■■■□□ 2.86
SYNGR3-206	ENST00000618464	PTPRU	Q92729	1446 aa		32.91	■■■□□ 2.86
SYNGR3-206	ENST00000618464	SETD5	Q9C0A6	1442 aa		32.9	■■■□□ 2.86
SYNGR3-206	ENST00000618464	AMOTL2	Q9Y2J4	779 aa		32.89	■■■□□ 2.86
SYNGR3-206	ENST00000618464	PHLPP1	O60346	1717 aa		32.87	■■■□□ 2.85
SYNGR3-206	ENST00000618464	C19orf44	Q9H6X5	657 aa		32.85	■■■□□ 2.85
SYNGR3-206	ENST00000618464	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.85	■■■□□ 2.85
SYNGR3-206	ENST00000618464	MET	P08581	1390 aa		32.84	■■■□□ 2.85
SYNGR3-206	ENST00000618464	CADPS2	Q86UW7	1296 aa		32.82	■■■□□ 2.84
SYNGR3-206	ENST00000618464	CCDC144A	A2RUR9	1427 aa		32.82	■■■□□ 2.84
SYNGR3-206	ENST00000618464	XRN1	Q8IZH2	1706 aa	Known RBP	32.8	■■■□□ 2.84
SYNGR3-206	ENST00000618464	VGF	O15240	615 aa	Predicted RBP	32.8	■■■□□ 2.84
SYNGR3-206	ENST00000618464	ATF3	P18847	181 aa		32.8	■■■□□ 2.84
SYNGR3-206	ENST00000618464	POTEA	Q6S8J7	498 aa		32.8	■■■□□ 2.84
SYNGR3-206	ENST00000618464	RAB3GAP2	Q9H2M9	1393 aa		32.8	■■■□□ 2.84
SYNGR3-206	ENST00000618464	JCAD	Q9P266	1359 aa		32.79	■■■□□ 2.84
SYNGR3-206	ENST00000618464	COL16A1	Q07092	1604 aa	Predicted RBP	32.78	■■■□□ 2.84
SYNGR3-206	ENST00000618464	RPGRIP1L	Q68CZ1	1315 aa		32.77	■■■□□ 2.84
SYNGR3-206	ENST00000618464	PPL	O60437	1756 aa		32.76	■■■□□ 2.84
SYNGR3-206	ENST00000618464	ACIN1	Q9UKV3	1341 aa	Known RBP	32.75	■■■□□ 2.83
SYNGR3-206	ENST00000618464	RGL3	Q3MIN7	710 aa		32.74	■■■□□ 2.83
SYNGR3-206	ENST00000618464	SPATA31E1	Q6ZUB1	1445 aa		32.69	■■■□□ 2.82
SYNGR3-206	ENST00000618464	SETD1A	O15047	1707 aa	Known RBP	32.69	■■■□□ 2.82
SYNGR3-206	ENST00000618464	BRINP3	Q76B58	766 aa		32.69	■■■□□ 2.82
SYNGR3-206	ENST00000618464	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.69	■■■□□ 2.82
SYNGR3-206	ENST00000618464	DCC	P43146	1447 aa		32.66	■■■□□ 2.82
SYNGR3-206	ENST00000618464	ADGRF5	Q8IZF2	1346 aa		32.64	■■■□□ 2.82
SYNGR3-206	ENST00000618464	LRP6	O75581	1613 aa		32.63	■■■□□ 2.81
SYNGR3-206	ENST00000618464	SPATA31A6	Q5VVP1	1343 aa		32.62	■■■□□ 2.81
SYNGR3-206	ENST00000618464	MST1R	Q04912	1400 aa		32.61	■■■□□ 2.81
SYNGR3-206	ENST00000618464	IFT172	Q9UG01	1749 aa		32.61	■■■□□ 2.81
SYNGR3-206	ENST00000618464	ANKRD30B	Q9BXX2	1392 aa		32.59	■■■□□ 2.81
SYNGR3-206	ENST00000618464	ADGRL3	Q9HAR2	1447 aa		32.59	■■■□□ 2.81
SYNGR3-206	ENST00000618464	ASXL1	Q8IXJ9	1541 aa		32.58	■■■□□ 2.81
SYNGR3-206	ENST00000618464	NALCN	Q8IZF0	1738 aa		32.58	■■■□□ 2.81
SYNGR3-206	ENST00000618464	ROBO2	Q9HCK4	1378 aa		32.58	■■■□□ 2.81
SYNGR3-206	ENST00000618464	SHPRH	Q149N8	1683 aa		32.57	■■■□□ 2.8
SYNGR3-206	ENST00000618464	PTCH1	Q13635	1447 aa		32.57	■■■□□ 2.8
SYNGR3-206	ENST00000618464	MEX3C	Q5U5Q3	659 aa	Known RBP	32.54	■■■□□ 2.8
SYNGR3-206	ENST00000618464	DDX17	Q92841	729 aa	Known RBP	32.5	■■■□□ 2.79
SYNGR3-206	ENST00000618464	NHSL1	Q5SYE7	1610 aa		32.5	■■■□□ 2.79
SYNGR3-206	ENST00000618464	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.49	■■■□□ 2.79
SYNGR3-206	ENST00000618464	NUTM2E	B1AL46	878 aa	Predicted RBP	32.49	■■■□□ 2.79
SYNGR3-206	ENST00000618464	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.49	■■■□□ 2.79
SYNGR3-206	ENST00000618464	PIK3C2G	O75747	1445 aa		32.49	■■■□□ 2.79
SYNGR3-206	ENST00000618464	PRAG1	Q86YV5	1406 aa		32.49	■■■□□ 2.79
SYNGR3-206	ENST00000618464	STK26	Q9P289	416 aa		32.48	■■■□□ 2.79
SYNGR3-206	ENST00000618464	HRC	P23327	699 aa		32.47	■■■□□ 2.79
SYNGR3-206	ENST00000618464	TMEM132E	Q6IEE7	984 aa		32.46	■■■□□ 2.79
SYNGR3-206	ENST00000618464	ZNF772	Q68DY9	489 aa	Predicted RBP	32.44	■■■□□ 2.78
SYNGR3-206	ENST00000618464	C1orf167	Q5SNV9	1468 aa		32.43	■■■□□ 2.78
SYNGR3-206	ENST00000618464	LRRC59	Q96AG4	307 aa	Known RBP	32.43	■■■□□ 2.78
SYNGR3-206	ENST00000618464	LRPPRC	P42704	1394 aa	Known RBP	32.41	■■■□□ 2.78
SYNGR3-206	ENST00000618464	MYOM2	P54296	1465 aa		32.41	■■■□□ 2.78
SYNGR3-206	ENST00000618464	NRXN1	Q9ULB1	1477 aa		32.38	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms