RNA–Protein interactions for RNA: ENST00000617806.4

BECN1-222, Transcript of beclin 1, human

TSL 5

Gene BECN1, Length 4,865 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BECN1-222	ENST00000617806	C11orf95	C9JLR9	678 aa	Predicted RBP	13.78	□□□□□ -0.2
BECN1-222	ENST00000617806	RIPK4	P57078	832 aa		13.78	□□□□□ -0.2
BECN1-222	ENST00000617806	CFTR	P13569	1480 aa		13.78	□□□□□ -0.2
BECN1-222	ENST00000617806	FANCD2	Q9BXW9	1451 aa		13.78	□□□□□ -0.2
BECN1-222	ENST00000617806	REC8	O95072	547 aa		13.78	□□□□□ -0.2
BECN1-222	ENST00000617806	PPP2R1A	P30153	589 aa		13.78	□□□□□ -0.2
BECN1-222	ENST00000617806	FYCO1	Q9BQS8	1478 aa		13.77	□□□□□ -0.21
BECN1-222	ENST00000617806	RAD54L2	Q9Y4B4	1467 aa		13.77	□□□□□ -0.21
BECN1-222	ENST00000617806	HSP90B1	P14625	803 aa	Known RBP	13.77	□□□□□ -0.21
BECN1-222	ENST00000617806	NUCB2	P80303	420 aa		13.77	□□□□□ -0.21
BECN1-222	ENST00000617806	ANKRD50	Q9ULJ7	1429 aa		13.76	□□□□□ -0.21
BECN1-222	ENST00000617806	AAMP	Q13685	434 aa		13.76	□□□□□ -0.21
BECN1-222	ENST00000617806	NBPF1	Q3BBV0	1214 aa		13.76	□□□□□ -0.21
BECN1-222	ENST00000617806	GPATCH3	Q96I76	525 aa		13.75	□□□□□ -0.21
BECN1-222	ENST00000617806	ATP6V1D	Q9Y5K8	247 aa		13.75	□□□□□ -0.21
BECN1-222	ENST00000617806	TCP11L2	Q8N4U5	519 aa		13.74	□□□□□ -0.21
BECN1-222	ENST00000617806	TULP1	O00294	542 aa	Predicted RBP	13.74	□□□□□ -0.21
BECN1-222	ENST00000617806	TPM4	P67936	248 aa		13.74	□□□□□ -0.21
BECN1-222	ENST00000617806	PDE3A	Q14432	1141 aa		13.74	□□□□□ -0.21
BECN1-222	ENST00000617806	RNF214	Q8ND24	703 aa		13.74	□□□□□ -0.21
BECN1-222	ENST00000617806	UBE2Q2	Q8WVN8	375 aa		13.74	□□□□□ -0.21
BECN1-222	ENST00000617806	EVC2	Q86UK5	1308 aa		13.73	□□□□□ -0.21
BECN1-222	ENST00000617806	WASHC2C	Q9Y4E1	1318 aa		13.73	□□□□□ -0.21
BECN1-222	ENST00000617806	HDGF	P51858	240 aa	Known RBP	13.73	□□□□□ -0.21
BECN1-222	ENST00000617806	TIAM1	Q13009	1591 aa		13.73	□□□□□ -0.21
BECN1-222	ENST00000617806	CAVIN1	Q6NZI2	390 aa	Known RBP	13.73	□□□□□ -0.21
BECN1-222	ENST00000617806	CHMP3	Q9Y3E7	222 aa		13.73	□□□□□ -0.21
BECN1-222	ENST00000617806	DIAPH1	O60610	1272 aa	Known RBP	13.72	□□□□□ -0.21
BECN1-222	ENST00000617806	ZNF592	Q92610	1267 aa		13.72	□□□□□ -0.21
BECN1-222	ENST00000617806	ANO2	Q9NQ90	1003 aa		13.72	□□□□□ -0.21
BECN1-222	ENST00000617806	INTS3	Q68E01	1043 aa	Known RBP	13.72	□□□□□ -0.21
BECN1-222	ENST00000617806	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.71	□□□□□ -0.21
BECN1-222	ENST00000617806	API5	Q9BZZ5	524 aa	Known RBP	13.71	□□□□□ -0.21
BECN1-222	ENST00000617806	GOLGA6L19	H0YKK7	550 aa		13.7	□□□□□ -0.22
BECN1-222	ENST00000617806	RBM10	P98175	930 aa	Known RBP	13.7	□□□□□ -0.22
BECN1-222	ENST00000617806	GRPEL1	Q9HAV7	217 aa		13.7	□□□□□ -0.22
BECN1-222	ENST00000617806	NUTM2F	A1L443	756 aa		13.7	□□□□□ -0.22
BECN1-222	ENST00000617806	MTHFS	P49914	203 aa		13.7	□□□□□ -0.22
BECN1-222	ENST00000617806	BECN2	A8MW95	431 aa		13.69	□□□□□ -0.22
BECN1-222	ENST00000617806	CDC45	O75419	566 aa		13.69	□□□□□ -0.22
BECN1-222	ENST00000617806	TPM2	P07951	284 aa		13.69	□□□□□ -0.22
BECN1-222	ENST00000617806	C20orf194	Q5TEA3	1177 aa		13.69	□□□□□ -0.22
BECN1-222	ENST00000617806	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.69	□□□□□ -0.22
BECN1-222	ENST00000617806	MCM4	P33991	863 aa		13.69	□□□□□ -0.22
BECN1-222	ENST00000617806	GAPVD1	Q14C86	1478 aa		13.69	□□□□□ -0.22
BECN1-222	ENST00000617806	NAIP	Q13075	1403 aa		13.68	□□□□□ -0.22
BECN1-222	ENST00000617806	SF3A1	Q15459	793 aa	Known RBP	13.68	□□□□□ -0.22
BECN1-222	ENST00000617806		H3BQV1	296 aa		13.68	□□□□□ -0.22
BECN1-222	ENST00000617806	IFFO2	Q5TF58	517 aa		13.68	□□□□□ -0.22
BECN1-222	ENST00000617806	CCDC173	Q0VFZ6	552 aa		13.67	□□□□□ -0.22
BECN1-222	ENST00000617806	ESPN	B1AK53	854 aa		13.67	□□□□□ -0.22
BECN1-222	ENST00000617806	PRPF40A	O75400	957 aa	Known RBP	13.67	□□□□□ -0.22
BECN1-222	ENST00000617806	EXOSC9	Q06265	439 aa	Known RBP	13.67	□□□□□ -0.22
BECN1-222	ENST00000617806	CHMP4A	Q9BY43	222 aa		13.67	□□□□□ -0.22
BECN1-222	ENST00000617806	CCDC39	Q9UFE4	941 aa		13.67	□□□□□ -0.22
BECN1-222	ENST00000617806	AMPH	P49418	695 aa		13.67	□□□□□ -0.22
BECN1-222	ENST00000617806	KIAA1107	Q9UPP5	1409 aa		13.66	□□□□□ -0.22
BECN1-222	ENST00000617806	LTV1	Q96GA3	475 aa	Predicted RBP	13.66	□□□□□ -0.22
BECN1-222	ENST00000617806	GGNBP2	Q9H3C7	697 aa		13.66	□□□□□ -0.22
BECN1-222	ENST00000617806	DIAPH3	Q9NSV4	1193 aa		13.66	□□□□□ -0.22
BECN1-222	ENST00000617806	HDAC5	Q9UQL6	1122 aa		13.66	□□□□□ -0.22
BECN1-222	ENST00000617806	MAP7D2	Q96T17	732 aa		13.66	□□□□□ -0.22
BECN1-222	ENST00000617806	VGF	O15240	615 aa	Predicted RBP	13.65	□□□□□ -0.22
BECN1-222	ENST00000617806	VPS37C	A5D8V6	355 aa	Predicted RBP	13.65	□□□□□ -0.22
BECN1-222	ENST00000617806	HMOX1	P09601	288 aa		13.65	□□□□□ -0.22
BECN1-222	ENST00000617806	FAM184A	Q8NB25	1140 aa		13.65	□□□□□ -0.22
BECN1-222	ENST00000617806	TSR2	Q969E8	191 aa	Known RBP	13.65	□□□□□ -0.22
BECN1-222	ENST00000617806	COG3	Q96JB2	828 aa		13.65	□□□□□ -0.22
BECN1-222	ENST00000617806	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.64	□□□□□ -0.23
BECN1-222	ENST00000617806	KIF3A	Q9Y496	699 aa		13.64	□□□□□ -0.23
BECN1-222	ENST00000617806	C1orf115	Q9H7X2	142 aa		13.64	□□□□□ -0.23
BECN1-222	ENST00000617806	GORAB	Q5T7V8	394 aa		13.64	□□□□□ -0.23
BECN1-222	ENST00000617806	NECTIN2	Q92692	538 aa		13.64	□□□□□ -0.23
BECN1-222	ENST00000617806	GNAI1	P63096	354 aa		13.64	□□□□□ -0.23
BECN1-222	ENST00000617806	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	SMC3	Q9UQE7	1217 aa		13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	ZKSCAN1	P17029	563 aa	Predicted RBP	13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	MTERF4	Q7Z6M4	381 aa	Known RBP	13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	ISY1	Q9ULR0	285 aa	Known RBP	13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	CFAP70	Q5T0N1	1121 aa		13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	CCAR2	Q8N163	923 aa	Known RBP	13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	GOLGA6L1	Q8N7Z2	621 aa		13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	BICD2	Q8TD16	824 aa		13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	IFT57	Q9NWB7	429 aa		13.63	□□□□□ -0.23
BECN1-222	ENST00000617806	PTPRG	P23470	1445 aa		13.62	□□□□□ -0.23
BECN1-222	ENST00000617806	CREBRF	Q8IUR6	639 aa		13.62	□□□□□ -0.23
BECN1-222	ENST00000617806	NGDN	Q8NEJ9	315 aa	Known RBP	13.62	□□□□□ -0.23
BECN1-222	ENST00000617806	NOB1	Q9ULX3	412 aa	Known RBP	13.62	□□□□□ -0.23
BECN1-222	ENST00000617806	TOP2B	Q02880	1626 aa		13.62	□□□□□ -0.23
BECN1-222	ENST00000617806	NEK4	P51957	841 aa		13.62	□□□□□ -0.23
BECN1-222	ENST00000617806	SLFN5	Q08AF3	891 aa		13.62	□□□□□ -0.23
BECN1-222	ENST00000617806	ROCK1	Q13464	1354 aa		13.61	□□□□□ -0.23
BECN1-222	ENST00000617806	TMEM132E	Q6IEE7	984 aa		13.61	□□□□□ -0.23
BECN1-222	ENST00000617806	CCDC9	Q9Y3X0	531 aa	Known RBP	13.61	□□□□□ -0.23
BECN1-222	ENST00000617806	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
BECN1-222	ENST00000617806	RRP9	O43818	475 aa	Known RBP	13.61	□□□□□ -0.23
BECN1-222	ENST00000617806	MBD3	O95983	291 aa		13.61	□□□□□ -0.23
BECN1-222	ENST00000617806	FKBP5	Q13451	457 aa	Predicted RBP	13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms