RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 SLFN5Q08AF3 891 aa16.83■□□□□ 0.29
MSH6-214ENST00000616033 RBM10P98175 930 aaKnown RBP16.83■□□□□ 0.28
MSH6-214ENST00000616033 L1TD1Q5T7N2 865 aaKnown RBP16.83■□□□□ 0.28
MSH6-214ENST00000616033 KIF14Q15058 1648 aa16.82■□□□□ 0.28
MSH6-214ENST00000616033 ATP10BO94823 1461 aa16.82■□□□□ 0.28
MSH6-214ENST00000616033 XRCC6P12956 609 aaKnown RBP eCLIP16.82■□□□□ 0.282e-10■■□□□ 12.2
MSH6-214ENST00000616033 AEBP2Q6ZN18 517 aaPredicted RBP16.82■□□□□ 0.28
MSH6-214ENST00000616033 TESK2Q96S53 571 aa16.82■□□□□ 0.28
MSH6-214ENST00000616033 SLC24A1O60721 1099 aa16.82■□□□□ 0.28
MSH6-214ENST00000616033 CCDC144AA2RUR9 1427 aa16.81■□□□□ 0.28
MSH6-214ENST00000616033 USP19O94966 1318 aa16.81■□□□□ 0.28
MSH6-214ENST00000616033 DNMT1P26358 1616 aaKnown RBP16.81■□□□□ 0.28
MSH6-214ENST00000616033 TBC1D2Q9BYX2 928 aa16.81■□□□□ 0.28
MSH6-214ENST00000616033 GPATCH8Q9UKJ3 1502 aaKnown RBP16.8■□□□□ 0.28
MSH6-214ENST00000616033 CENPJQ9HC77 1338 aaPredicted RBP16.79■□□□□ 0.28
MSH6-214ENST00000616033 PDZRN3Q9UPQ7 1066 aa16.77■□□□□ 0.27
MSH6-214ENST00000616033 ERBINQ96RT1 1412 aa16.76■□□□□ 0.27
MSH6-214ENST00000616033 C9orf84Q5VXU9 1444 aa16.75■□□□□ 0.27
MSH6-214ENST00000616033 PCDHB15Q9Y5E8 787 aa16.75■□□□□ 0.27
MSH6-214ENST00000616033 ERCC6L2Q5T890 1561 aa16.75■□□□□ 0.27
MSH6-214ENST00000616033 TRAK2O60296 914 aa16.74■□□□□ 0.27
MSH6-214ENST00000616033 BLMP54132 1417 aaPredicted RBP16.74■□□□□ 0.27
MSH6-214ENST00000616033 UHRF1BP1Q6BDS2 1440 aa16.74■□□□□ 0.27
MSH6-214ENST00000616033 TRIM44Q96DX7 344 aaPredicted RBP16.73■□□□□ 0.27
MSH6-214ENST00000616033 ZBTB7CA1YPR0 619 aa16.73■□□□□ 0.27
MSH6-214ENST00000616033 RLBP1P12271 317 aa16.73■□□□□ 0.27
MSH6-214ENST00000616033 MCM4P33991 863 aa16.73■□□□□ 0.27
MSH6-214ENST00000616033 MYH16Q9H6N6 1097 aa16.72■□□□□ 0.27
MSH6-214ENST00000616033 ZMYM4Q5VZL5 1548 aa16.72■□□□□ 0.27
MSH6-214ENST00000616033 E9PSI1 815 aa16.72■□□□□ 0.27
MSH6-214ENST00000616033 MAPK8IP3Q9UPT6 1336 aa16.71■□□□□ 0.27
MSH6-214ENST00000616033 CGNL1Q0VF96 1302 aa16.7■□□□□ 0.26
MSH6-214ENST00000616033 PRAG1Q86YV5 1406 aa16.7■□□□□ 0.26
MSH6-214ENST00000616033 FTSJ3Q8IY81 847 aaKnown RBP16.7■□□□□ 0.26
MSH6-214ENST00000616033 AFAP1Q8N556 730 aa16.7■□□□□ 0.26
MSH6-214ENST00000616033 C22orf23Q9BZE7 217 aa16.68■□□□□ 0.26
MSH6-214ENST00000616033 ANTXR1Q9H6X2 564 aa16.67■□□□□ 0.26
MSH6-214ENST00000616033 CHGAP10645 457 aaKnown RBP16.67■□□□□ 0.26
MSH6-214ENST00000616033 TBC1D32Q96NH3 1257 aa16.67■□□□□ 0.26
MSH6-214ENST00000616033 ZNF521Q96K83 1311 aa16.66■□□□□ 0.26
MSH6-214ENST00000616033 HSCBQ8IWL3 235 aa16.66■□□□□ 0.26
MSH6-214ENST00000616033 WWC1Q8IX03 1113 aa16.66■□□□□ 0.26
MSH6-214ENST00000616033 NKTRP30414 1462 aaKnown RBP16.66■□□□□ 0.26
MSH6-214ENST00000616033 NCLP19338 710 aaKnown RBP16.66■□□□□ 0.26
MSH6-214ENST00000616033 PMFBP1Q8TBY8 1022 aa16.64■□□□□ 0.25
MSH6-214ENST00000616033 MAGI2Q86UL8 1455 aa16.64■□□□□ 0.25
MSH6-214ENST00000616033 HSP90AB1P08238 724 aaKnown RBP16.64■□□□□ 0.25
MSH6-214ENST00000616033 ITPRIPQ8IWB1 547 aa16.64■□□□□ 0.25
MSH6-214ENST00000616033 RWDD1Q9H446 243 aaPredicted RBP16.64■□□□□ 0.25
MSH6-214ENST00000616033 GRPEL1Q9HAV7 217 aa16.64■□□□□ 0.25
MSH6-214ENST00000616033 COL17A1Q9UMD9 1497 aaPredicted RBP16.63■□□□□ 0.25
MSH6-214ENST00000616033 CHMP5Q9NZZ3 219 aa16.63■□□□□ 0.25
MSH6-214ENST00000616033 PDE4CQ08493 712 aa16.63■□□□□ 0.25
MSH6-214ENST00000616033 TSR2Q969E8 191 aaKnown RBP16.63■□□□□ 0.25
MSH6-214ENST00000616033 CHD1O14646 1710 aa16.63■□□□□ 0.25
MSH6-214ENST00000616033 PDE3AQ14432 1141 aa16.63■□□□□ 0.25
MSH6-214ENST00000616033 TCP11L2Q8N4U5 519 aa16.63■□□□□ 0.25
MSH6-214ENST00000616033 EIF3AQ14152 1382 aaKnown RBP16.62■□□□□ 0.25
MSH6-214ENST00000616033 ESPNB1AK53 854 aa16.62■□□□□ 0.25
MSH6-214ENST00000616033 PRDM10Q9NQV6 1147 aa16.62■□□□□ 0.25
MSH6-214ENST00000616033 MORC1Q86VD1 984 aa16.61■□□□□ 0.25
MSH6-214ENST00000616033 ERBB4Q15303 1308 aa16.61■□□□□ 0.25
MSH6-214ENST00000616033 RARSP54136 660 aaKnown RBP16.61■□□□□ 0.25
MSH6-214ENST00000616033 EFCAB2Q5VUJ9 269 aa16.61■□□□□ 0.25
MSH6-214ENST00000616033 ZHX1Q9UKY1 873 aaPredicted RBP16.6■□□□□ 0.25
MSH6-214ENST00000616033 ARHGAP5Q13017 1502 aa16.6■□□□□ 0.25
MSH6-214ENST00000616033 CLCN1P35523 988 aa16.6■□□□□ 0.25
MSH6-214ENST00000616033 ABCA8O94911 1581 aa16.6■□□□□ 0.25
MSH6-214ENST00000616033 A2MP01023 1474 aa16.6■□□□□ 0.25
MSH6-214ENST00000616033 PLEKHH2Q8IVE3 1493 aa16.6■□□□□ 0.25
MSH6-214ENST00000616033 LNPKQ9C0E8 428 aa16.6■□□□□ 0.25
MSH6-214ENST00000616033 BCL11BQ9C0K0 894 aaPredicted RBP16.6■□□□□ 0.25
MSH6-214ENST00000616033 RRP9O43818 475 aaKnown RBP16.59■□□□□ 0.25
MSH6-214ENST00000616033 MRE11P49959 708 aa16.59■□□□□ 0.25
MSH6-214ENST00000616033 ARHGEF12Q9NZN5 1544 aa16.59■□□□□ 0.25
MSH6-214ENST00000616033 CDCA8Q53HL2 280 aa16.59■□□□□ 0.25
MSH6-214ENST00000616033 TPRNQ4KMQ1 711 aa16.58■□□□□ 0.25
MSH6-214ENST00000616033 CFAP70Q5T0N1 1121 aa16.58■□□□□ 0.25
MSH6-214ENST00000616033 NPM1P06748 294 aaKnown RBP eCLIP16.58■□□□□ 0.24
MSH6-214ENST00000616033 U2AF1L5P0DN76 240 aaPredicted RBP16.58■□□□□ 0.24
MSH6-214ENST00000616033 U2AF1Q01081 240 aaKnown RBP eCLIP16.58■□□□□ 0.24
MSH6-214ENST00000616033 SMC4Q9NTJ3 1288 aa16.58■□□□□ 0.24
MSH6-214ENST00000616033 U2SURPO15042 1029 aaKnown RBP16.58■□□□□ 0.24
MSH6-214ENST00000616033 MAPK8IP2Q13387 824 aaPredicted RBP16.58■□□□□ 0.24
MSH6-214ENST00000616033 GAS2L3Q86XJ1 694 aa16.57■□□□□ 0.24
MSH6-214ENST00000616033 SAFB2Q14151 953 aaKnown RBP eCLIP16.57■□□□□ 0.24
MSH6-214ENST00000616033 AAMPQ13685 434 aa16.57■□□□□ 0.24
MSH6-214ENST00000616033 TRMT2AQ8IZ69 625 aaKnown RBP16.57■□□□□ 0.24
MSH6-214ENST00000616033 ABCC10Q5T3U5 1492 aa16.56■□□□□ 0.24
MSH6-214ENST00000616033 CARD14Q9BXL6 1004 aa16.56■□□□□ 0.24
MSH6-214ENST00000616033 OSCARQ8IYS5 282 aa16.55■□□□□ 0.24
MSH6-214ENST00000616033 FAM13BQ9NYF5 915 aa16.55■□□□□ 0.24
MSH6-214ENST00000616033 E9PCH4 1651 aa16.55■□□□□ 0.24
MSH6-214ENST00000616033 FAM135AQ9P2D6 1515 aa16.55■□□□□ 0.24
MSH6-214ENST00000616033 FSD2A1L4K1 749 aa16.54■□□□□ 0.24
MSH6-214ENST00000616033 TNPO1Q92973 898 aaKnown RBP16.54■□□□□ 0.24
MSH6-214ENST00000616033 RBM42Q9BTD8 480 aaKnown RBP16.54■□□□□ 0.24
MSH6-214ENST00000616033 SLC12A5Q9H2X9 1139 aa16.54■□□□□ 0.24
MSH6-214ENST00000616033 TRAK1Q9UPV9 953 aa16.54■□□□□ 0.24
MSH6-214ENST00000616033 ADGRL2O95490 1459 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms